Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0932.Seq
         (713 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         22   5.0  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   5.0  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   5.0  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   6.6  

>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -2

Query: 460 LDSGGVQPDHQSVPRSAGQLPLRYRR 383
           ++   ++PD + +  +   LPLR+RR
Sbjct: 36  IEEENIEPDTELMDSNEPLLPLRHRR 61


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
 Frame = -3

Query: 288 RGTRHTLVTVLEVCCASRIR-----SFRSSPKPSGSV*KYFA 178
           R  R   V +L  CC  R+R     +FR  P    +  +Y++
Sbjct: 395 RDFRRAFVRILCACCPGRVRRRYQPAFRCKPSQRFASGRYYS 436


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +2

Query: 212 GDERNDRMREAQQTSSTVTSVWRVPRSSASVPPFITGLVSSRYQSQNWFQVNSYR 376
           GDE +  + E Q   S+ +S WR  R+     PF       RY    W Q+  ++
Sbjct: 434 GDESD--VVELQPVKSSKSSGWRKLRNIVHWTPFFQTYKKQRYP---WVQLAGHQ 483


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = +2

Query: 203 DGFGDERNDRMREAQQTSSTVTSVWRVPRSSASVPPF 313
           DG GD +  + + +    S +T++W  P + + +  F
Sbjct: 44  DGIGDLKGIKDKLSHFIESGITAIWLSPINRSPMVDF 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,056
Number of Sequences: 438
Number of extensions: 4089
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)