Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0930.Seq
         (413 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces p...    26   2.7  
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   3.5  
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   3.5  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    25   6.1  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    25   6.1  
SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr ...    25   6.1  
SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr 2...    25   6.1  

>SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 506

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -2

Query: 166 KSAHHWKTFFGAKTLKDLTAVEIQFDVTHSCTQLIFSIF 50
           K  H WK F    TLK+  A E Q D       L ++IF
Sbjct: 234 KIVHLWKEFASTGTLKE--AEEFQKDPASKILLLFYNIF 270


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +3

Query: 189 YYPVLTPGKSNSVAAYTILRMTG*VLTSHRKASYGWHDS 305
           YY V TP K  +V + T+         S  KASY    S
Sbjct: 568 YYHVKTPEKGTTVVSRTVTSPKSGAYASPSKASYNQDSS 606


>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
 Frame = -1

Query: 191 IPRHIAEL*KCSSLENVLRGENSQGSYRC*DPVRCN--PLVHPTDLQHLLLSPAFLGE 24
           +P HI  + K  SLEN  + +N         P+  +    + PT L   +  P   GE
Sbjct: 391 LPAHITSITKLQSLENSTKNDNVPLVTHSPSPMHSSFTVSIKPTQLSENVFDPTSSGE 448


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = +2

Query: 41  VKVKDAEDQLGARVGYIE-LDLNSGKILESFRPEER 145
           VK+KD +D+LG  + ++E L++ S   + SF+ + R
Sbjct: 260 VKIKDHDDELGGAMEHLERLEIKS---VASFKGDSR 292


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 337 SWLWQHCIILLLSC 296
           SWLWQ    LLL+C
Sbjct: 160 SWLWQRFSSLLLNC 173


>SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 241 FSE*LVEYSPVTEKHLTDGMTVRELCSAA 327
           FS  + EY+     H T G ++++L SAA
Sbjct: 103 FSNSITEYARYATGHGTSGYSIKKLISAA 131


>SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 518

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 124 LKDLTAVEIQFDVTHSCTQLIFSIFYFHQRFWVS 23
           L+ LTAV +QFD+  + T L+      H  F  S
Sbjct: 221 LRRLTAVRLQFDIMKAETMLLCRCDTDHAEFITS 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,707,156
Number of Sequences: 5004
Number of extensions: 32648
Number of successful extensions: 90
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)