Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0930.Seq
         (413 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0648 + 5602454-5602513,5602913-5603000,5603128-5604248,560...    29   1.5  
08_01_0650 + 5617578-5618633,5619580-5619735,5619816-5620058           29   1.9  
05_07_0248 - 28651807-28651908,28652001-28652061,28652164-286522...    28   2.6  
03_05_1128 + 30590727-30590772,30590868-30590939,30591181-305913...    27   5.9  
12_02_0796 + 23224357-23224427,23225714-23225810,23226335-232271...    27   7.8  
07_01_0954 - 8016804-8016905,8017409-8017469,8017543-8017649,801...    27   7.8  
04_01_0487 + 6406826-6407086,6413538-6413996,6414401-6414570,641...    27   7.8  

>08_01_0648 +
           5602454-5602513,5602913-5603000,5603128-5604248,
           5605146-5605217,5605218-5605373,5605458-5605748
          Length = 595

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 6   FAFLFLLTQKRW*K*KMLKISWVHEWVTSNWISTAVR 116
           F    LL ++ +   K L++ W H+   +NWI+ AVR
Sbjct: 144 FVTTMLLRRRPFAPIKALRLCWSHDGDANNWIAHAVR 180


>08_01_0650 + 5617578-5618633,5619580-5619735,5619816-5620058
          Length = 484

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 6   FAFLFLLTQKRW*K*KMLKISWVHEWVTSNWISTAVR 116
           F    LL ++ +   K L++ W H+   +NWI+ AVR
Sbjct: 92  FVDTLLLRRRPFAPIKALRLCWSHDGDANNWIAHAVR 128


>05_07_0248 -
           28651807-28651908,28652001-28652061,28652164-28652270,
           28652369-28652473,28652556-28652642,28652814-28652894,
           28653083-28653155,28653243-28653355,28653439-28653532,
           28653633-28653688,28653779-28653865,28653975-28654064,
           28654178-28654348,28654752-28654871,28654981-28655193
          Length = 519

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +2

Query: 44  KVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVL 193
           K+ +    + ARVG   +  NS  + ES RPEE + + S   V+L  A +
Sbjct: 464 KINNCIIDMNARVGRNVVITNSEGVQESDRPEEGYYIRSGIVVILKNATI 513


>03_05_1128 +
           30590727-30590772,30590868-30590939,30591181-30591371,
           30592004-30592067,30592713-30592963,30593066-30593104,
           30593193-30593213
          Length = 227

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 239 SVCGDRVALARRQYGIIPRHIAEL 168
           S+C ++V LAR+ Y +I  HI  L
Sbjct: 88  SLCTEKVLLARQAYDLIESHIKRL 111


>12_02_0796 +
           23224357-23224427,23225714-23225810,23226335-23227146,
           23227593-23227619,23227620-23229624
          Length = 1003

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = +2

Query: 95  LDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDWLST--H 268
           LD+  G+ ++S    E    +S  K L     +  IDA  EQLG   H    D +ST   
Sbjct: 641 LDIEHGEDMDS-NYLEHVRRLSQLKYLRLN--VRSIDALPEQLGELQHLQTLDLVSTKLR 697

Query: 269 QSQKSILRM 295
           +S KSI+R+
Sbjct: 698 KSPKSIVRL 706


>07_01_0954 -
           8016804-8016905,8017409-8017469,8017543-8017649,
           8018278-8018382,8018460-8018546,8018631-8018711,
           8018872-8018944,8019288-8019400,8019695-8019788,
           8020060-8020115,8020212-8020295,8020384-8020476,
           8020592-8020765,8020956-8021099,8021225-8021380
          Length = 509

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +2

Query: 74  ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVL 193
           AR+G   + +NS  + E+ RP E F + S   V+L  AV+
Sbjct: 464 ARIGKNVMIMNSQNVQEAERPLEGFYIRSGITVVLKNAVI 503


>04_01_0487 +
           6406826-6407086,6413538-6413996,6414401-6414570,
           6415146-6415175,6415777-6415939,6416020-6417132
          Length = 731

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 5   FCLPVFAHPETLVKVKDAEDQLGARVGYIE 94
           FCL +  H   L  V  + ++LGA++GY+E
Sbjct: 675 FCLGI-QHLSCLTMVSVSTNRLGAKLGYVE 703


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,204,660
Number of Sequences: 37544
Number of extensions: 213908
Number of successful extensions: 542
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)