Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0930.Seq
         (413 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14331-7|AAN65310.1|  510|Caenorhabditis elegans Hypothetical pr...    28   3.1  
L14331-6|AAN65311.1|  473|Caenorhabditis elegans Hypothetical pr...    28   3.1  
Z48241-1|CAA88285.1|  346|Caenorhabditis elegans Hypothetical pr...    27   4.1  
Z81541-4|CAD91634.1|  266|Caenorhabditis elegans Hypothetical pr...    26   9.4  
AJ487543-1|CAD31791.1|  266|Caenorhabditis elegans farnesylated-...    26   9.4  

>L14331-7|AAN65310.1|  510|Caenorhabditis elegans Hypothetical
           protein K12H4.7a protein.
          Length = 510

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +1

Query: 259 EYSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAF 402
           EY  V +  +T   T    C+A++T   N  A+LL T+ G  +  TAF
Sbjct: 222 EYLEVVQNSITRNSTE---CAASVTQGFNLVASLLQTSDGRKQLKTAF 266


>L14331-6|AAN65311.1|  473|Caenorhabditis elegans Hypothetical
           protein K12H4.7b protein.
          Length = 473

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +1

Query: 259 EYSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAF 402
           EY  V +  +T   T    C+A++T   N  A+LL T+ G  +  TAF
Sbjct: 222 EYLEVVQNSITRNSTE---CAASVTQGFNLVASLLQTSDGRKQLKTAF 266


>Z48241-1|CAA88285.1|  346|Caenorhabditis elegans Hypothetical
           protein C32A3.2 protein.
          Length = 346

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 382 VLRSLSEVSWPQCYHSWLWQHCIILLLSC 296
           +  SL   SW   YH W+ ++ + LL+ C
Sbjct: 306 MFHSLITYSWRDIYHHWVSRNLVQLLILC 334


>Z81541-4|CAD91634.1|  266|Caenorhabditis elegans Hypothetical
           protein F48F5.5 protein.
          Length = 266

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 355 WPQCYHSWLWQHCIIL 308
           W  C++SW+W+  II+
Sbjct: 111 WKLCFNSWVWRRDIIV 126


>AJ487543-1|CAD31791.1|  266|Caenorhabditis elegans
           farnesylated-proteins convertingenzyme-2 protein.
          Length = 266

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 355 WPQCYHSWLWQHCIIL 308
           W  C++SW+W+  II+
Sbjct: 111 WKLCFNSWVWRRDIIV 126


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,571,592
Number of Sequences: 27780
Number of extensions: 184362
Number of successful extensions: 467
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)