Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0929X.Seq
(370 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |... 29 0.30
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac... 28 0.40
SPAC2F7.05c |||translation initiation factor eIF5 |Schizosacchar... 27 0.93
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce... 27 0.93
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo... 27 1.2
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 2.1
SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch... 25 2.8
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 25 3.7
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 25 3.7
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 25 3.7
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 4.9
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy... 25 4.9
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 25 4.9
SPAC4F8.08 |mug114||sequence orphan|Schizosaccharomyces pombe|ch... 24 6.5
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||... 24 6.5
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 24 6.5
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 24 6.5
SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 24 6.5
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 24 8.6
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 24 8.6
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 24 8.6
SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|... 24 8.6
>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 28.7 bits (61), Expect = 0.30
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +1
Query: 208 ADASRRHVGRNGRRIHKKIEESQAAETQFKG*IKKL 315
A+ +RR G+NG R+ + +E + + +++ IKKL
Sbjct: 237 AEKARRQFGKNGIRLSQDAQEEEKQKKKYEQHIKKL 272
>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 797
Score = 28.3 bits (60), Expect = 0.40
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 17 EVKKENIEGKIEDLEQKIRKEKEDEKLPV 103
E KKE +E K D E+ K++E E LPV
Sbjct: 681 EDKKEEVEKKDGDKERNEEKKEEKETLPV 709
>SPAC2F7.05c |||translation initiation factor eIF5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 395
Score = 27.1 bits (57), Expect = 0.93
Identities = 16/51 (31%), Positives = 30/51 (58%)
Frame = +2
Query: 29 ENIEGKIEDLEQKIRKEKEDEKLPVDPTMGSKIRALLISEQDLKSRVAELE 181
E +G ++L ++IR+E + LP + + A+ SE+ +++RV ELE
Sbjct: 163 EEEDGAEDELTRRIRQEAAE--LPTAEVVNDEDWAVDTSEEAVRARVQELE 211
>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 481
Score = 27.1 bits (57), Expect = 0.93
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 211 DASRRHVGRNGRRIHKKIEESQAAETQF 294
D S +V RNG +KI +++ A T+F
Sbjct: 46 DKSASYVARNGPAFEEKIRQNEQANTKF 73
>SPAC6G10.07 |||nuclear cap-binding complex large subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 780
Score = 26.6 bits (56), Expect = 1.2
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +2
Query: 20 VKKENIEGKIEDLEQKIRKEKEDEKL-PVD 106
VKK+ IE E +++ +E+ED K+ PVD
Sbjct: 730 VKKDTIEEANEPVQENTSEEQEDTKMQPVD 759
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.8 bits (54), Expect = 2.1
Identities = 11/36 (30%), Positives = 25/36 (69%)
Frame = -1
Query: 259 SYVSAVHFGPHVVCLRQHLQIRSLPSLQLRHSALQV 152
++V+ VH P V C+ Q +I +LP+++++ + L++
Sbjct: 2819 AHVARVHHLPEV-CINQLTKIYTLPNIEIQEAFLKL 2853
>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 2.8
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = +2
Query: 29 ENIEGKIEDLEQKIRKEKEDEKLPVDPTMGSKIRALLISEQDLKSRVAE----LERRETA 196
E +E K E + + KE+E+ PVD G K+ + ++D V + + R ++A
Sbjct: 125 EGLERKREHEKLQAPSPKEEEERPVD--QGDKMDGVK-EDKDGSLEVGKSHDAMTRTKSA 181
Query: 197 YLEMLTQADDMWAEM 241
E++ Q D+ AEM
Sbjct: 182 EEEIVEQEDEATAEM 196
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.0 bits (52), Expect = 3.7
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -1
Query: 220 CLRQHLQIRSLPSLQLRHSAL 158
C RQ QIR L L LRH L
Sbjct: 229 CRRQMAQIRELVELPLRHPQL 249
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1385
Score = 25.0 bits (52), Expect = 3.7
Identities = 15/69 (21%), Positives = 30/69 (43%)
Frame = +2
Query: 26 KENIEGKIEDLEQKIRKEKEDEKLPVDPTMGSKIRALLISEQDLKSRVAELERRETAYLE 205
K+ IE +++++ +K + + +L + K+R L L A LE+R
Sbjct: 1014 KDRIEREVKNVVEKFDEVNDQIELMRSDVLLRKVRPGLDQTSQLNEESAYLEKRIQTLER 1073
Query: 206 MLTQADDMW 232
L + +W
Sbjct: 1074 SLEEVTPIW 1082
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.0 bits (52), Expect = 3.7
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +2
Query: 50 EDLEQKIRKEKEDEKLPVDPTMGSK-IRALLISEQDL--KSRVAELERRETAYLEM 208
EDL K+ KE ED+K D + K L +E D KS V +++R E E+
Sbjct: 677 EDLIAKLNKEVEDQK---DVILSQKRTNETLKTEIDALQKSHVTQIQRSEVELREL 729
>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 24.6 bits (51), Expect = 4.9
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 178 QLRHSALQVLFADQQRPNLAAHRR 107
+LR +Q L ++QR LAAHR+
Sbjct: 210 KLRAKEMQELADEEQRRRLAAHRK 233
>SPAC1687.11 |spb1||rRNA methyltransferase Spb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 802
Score = 24.6 bits (51), Expect = 4.9
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +3
Query: 18 KSRRKTSKGRLRTW 59
KS++KT+KGRL W
Sbjct: 3 KSQKKTAKGRLDKW 16
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 24.6 bits (51), Expect = 4.9
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +2
Query: 14 AEVKKENIEGKIEDLEQKIRKEKEDEKLPVDPTMGSKIRALLISEQD 154
A + KE E + +QK+ K+ E E + SKIR L S+ D
Sbjct: 169 AAITKEECEKSWLE-QQKLYKDMEQENASTIQKLTSKIRELQASQLD 214
>SPAC4F8.08 |mug114||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 151
Score = 24.2 bits (50), Expect = 6.5
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 82 GRRKAPS*SDDGQQDSGVADQRTRLEEQS 168
G+ K D Q+D+G +QR RLE +
Sbjct: 95 GKGKEREVKTDRQRDTGSGEQRIRLERDT 123
>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 498
Score = 24.2 bits (50), Expect = 6.5
Identities = 12/48 (25%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +2
Query: 17 EVKKENIEGKIEDLEQKIRKEKEDEKLPVDPTM-GSKIRALLISEQDL 157
+VKK++IE + D E ++ +ED +L + + ++A+ +++ D+
Sbjct: 424 DVKKQDIERQERDYELFLQNLEEDPELRQGVNLYKAPVKAIAVADTDM 471
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 24.2 bits (50), Expect = 6.5
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 35 IEGKIEDLEQKIRKEKEDEKLPVDPTMGSK 124
I+ +E+L+ R++ E P DP+MGS+
Sbjct: 584 IKVTLENLDDSYREQIEIPFNPKDPSMGSR 613
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 24.2 bits (50), Expect = 6.5
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +2
Query: 140 ISEQDLKSRVAELERRETAYLEMLTQADDMWAEM 241
I +LK RVA+LE RE A LE AEM
Sbjct: 47 IERAELKIRVAQLE-RERAKLEQSLSFQQRRAEM 79
>SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 24.2 bits (50), Expect = 6.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 18 KSRRKTSKGRLRTWNRKYERRRKT 89
K++ KG + WNRK+ RKT
Sbjct: 166 KAKFPIIKGFIEMWNRKFFNPRKT 189
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 23.8 bits (49), Expect = 8.6
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +2
Query: 80 KEDEKLPVDPTMGSKIRALLIS 145
KED +L +DP++ +K R + +S
Sbjct: 419 KEDFQLELDPSLSTKERTIALS 440
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 23.8 bits (49), Expect = 8.6
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +2
Query: 137 LISEQDLKSRVAELERRETAYLEMLTQADDMWAEMD 244
L EQ+ + R A+L+R ++ E + +A + E+D
Sbjct: 770 LEQEQEERRRRAQLDREFKSFAEKIAEASEGRIELD 805
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 23.8 bits (49), Expect = 8.6
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -3
Query: 242 PFRPTCRL-LASASPDTQSPVSPAPPL 165
PF P + ++SAS Q+P+S +PP+
Sbjct: 248 PFVPRRQFSVSSASDPPQTPISMSPPI 274
>SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 405
Score = 23.8 bits (49), Expect = 8.6
Identities = 12/75 (16%), Positives = 33/75 (44%)
Frame = +2
Query: 17 EVKKENIEGKIEDLEQKIRKEKEDEKLPVDPTMGSKIRALLISEQDLKSRVAELERRETA 196
+ +E + I+ L + +++ + P++G K+R + E L+++ R +
Sbjct: 264 DTAEETLRSCIQGLNIDAKIVRKERSVGFVPSLGQKLRREQLEEAVLETQATLQIRNFSV 323
Query: 197 YLEMLTQADDMWAEM 241
+D+W ++
Sbjct: 324 PFTAFNGGNDIWCDI 338
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,383,238
Number of Sequences: 5004
Number of extensions: 25167
Number of successful extensions: 108
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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