Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0925.Seq
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   1.9  
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo...    26   4.3  
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   10.0 
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    25   10.0 

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +2

Query: 287 KAMCHEGGCGACVVAVRASLPPNNEMKTFAVNS 385
           K  CH G CGAC   + A        KT+  +S
Sbjct: 354 KKRCHSGLCGACFEPINAKCYCGLHSKTYPCSS 386


>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 432

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -3

Query: 626 PVHRQMLPAKEFSIS--FWLNFLFFDWYILYMFMTHPGVQNHIVY 498
           P   ++L  KEF +   F +  LF+D ++ Y+F T  GV   I Y
Sbjct: 74  PCTCKILKLKEFELPDRFDIPNLFYDGWLSYVFHTFSGVYLKIGY 118


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 137 IHPLKLEFYKLSKLRFLGKTT 75
           + PLK +F  + KL+ +GK T
Sbjct: 64  LEPLKRDFSSMDKLKLIGKIT 84


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -1

Query: 208 CLSLIFNFILSMIVYYHRNVFNVSYIH 128
           CL L F +  +  ++ HR  F   Y H
Sbjct: 177 CLQLFFKWQYAQFLFIHRESFLFEYFH 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,805,150
Number of Sequences: 5004
Number of extensions: 57196
Number of successful extensions: 132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)