Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0925.Seq
(676 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1146 + 10756897-10757065,10763869-10765521,10765638-107659... 88 7e-18
10_01_0217 + 2337950-2338085,2340766-2342436,2342636-2342898,234... 85 5e-17
03_06_0253 - 32666152-32666360,32666443-32666632,32666764-326668... 85 6e-17
03_06_0252 - 32656068-32656276,32656361-32656550,32656682-326567... 85 6e-17
07_01_0464 - 3504264-3504475,3504842-3505031,3505310-3505408,350... 67 1e-11
03_04_0157 + 17791540-17791681,17792809-17792908,17793386-177934... 66 2e-11
07_01_1149 + 10789733-10791209,10791326-10791588,10791745-107919... 51 1e-06
08_02_0601 + 19177129-19177245,19178231-19179103 29 4.5
>07_01_1146 +
10756897-10757065,10763869-10765521,10765638-10765900,
10766057-10766266,10766818-10767036,10767379-10768344,
10768575-10768670,10768772-10768870,10769349-10769538,
10769623-10769855
Length = 1365
Score = 87.8 bits (208), Expect = 7e-18
Identities = 38/89 (42%), Positives = 52/89 (58%)
Frame = +2
Query: 257 IRNVAELRGTKAMCHEGGCGACVVAVRASLPPNNEMKTFAVNSCLVSILSCHEWEVITVE 436
IR +G K C EGGCGACV+ + P +E+ F +SCL + S H +IT E
Sbjct: 41 IRTRTPFKGPKLGCGEGGCGACVILIAKYNPKTDEVTEFNASSCLTLLYSIHFCSIITTE 100
Query: 437 GIGNKSIGYHEIQTRLANFNGTQCGFVHP 523
G+GN G+H IQ R++ F+ +QCGF P
Sbjct: 101 GLGNTKDGFHAIQKRMSGFHASQCGFCTP 129
Score = 51.2 bits (117), Expect = 7e-07
Identities = 27/54 (50%), Positives = 34/54 (62%), Gaps = 11/54 (20%)
Frame = +1
Query: 511 FCTPGWVMNMYS--IYQSKNKK---------LSQKEIENSFAGNICRCTGYRPI 639
FCTPG M+++S + K+KK LS E E SF+GN+CRCTGYRPI
Sbjct: 126 FCTPGMCMSIFSSLVNADKSKKPDPPKGFSKLSVSEAERSFSGNMCRCTGYRPI 179
>10_01_0217 +
2337950-2338085,2340766-2342436,2342636-2342898,
2343027-2343236,2343436-2343654,2344038-2345000,
2345279-2345374,2345482-2345580,2345953-2346142,
2346594-2346823
Length = 1358
Score = 85.0 bits (201), Expect = 5e-17
Identities = 40/89 (44%), Positives = 51/89 (57%)
Frame = +2
Query: 257 IRNVAELRGTKAMCHEGGCGACVVAVRASLPPNNEMKTFAVNSCLVSILSCHEWEVITVE 436
+R RG K C EGGCGAC V V +E+ +F+ +SCL + S H V T E
Sbjct: 30 LRTRTPFRGPKLGCGEGGCGACAVVVSKYDAAADEVTSFSASSCLTLLGSLHHCAVTTSE 89
Query: 437 GIGNKSIGYHEIQTRLANFNGTQCGFVHP 523
GIGN G+H +Q RLA F+ +QCGF P
Sbjct: 90 GIGNSRDGFHPVQRRLAGFHASQCGFCTP 118
Score = 37.5 bits (83), Expect = 0.010
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 16/59 (27%)
Frame = +1
Query: 511 FCTPGWVMNMYSIYQSKNK----------------KLSQKEIENSFAGNICRCTGYRPI 639
FCTPG ++++S + ++ +L+ + E + +GN+CRCTGYRPI
Sbjct: 115 FCTPGMCVSIFSALANADRAASAAPPPPPTPPGFSRLTAADAERAVSGNLCRCTGYRPI 173
>03_06_0253 -
32666152-32666360,32666443-32666632,32666764-32666862,
32666999-32667094,32667408-32668361,32668683-32668901,
32669282-32669491,32669617-32669879,32670041-32671717,
32672702-32672852
Length = 1355
Score = 84.6 bits (200), Expect = 6e-17
Identities = 40/89 (44%), Positives = 52/89 (58%)
Frame = +2
Query: 257 IRNVAELRGTKAMCHEGGCGACVVAVRASLPPNNEMKTFAVNSCLVSILSCHEWEVITVE 436
+R +RG K C EGGCGACVV V +E+ F+ +SCL + S H V T E
Sbjct: 35 LRTRTPVRGPKLGCGEGGCGACVVVVSKYDAVADEVTEFSASSCLTLLGSLHHCAVTTSE 94
Query: 437 GIGNKSIGYHEIQTRLANFNGTQCGFVHP 523
GIGN G+H +Q RL+ F+ +QCGF P
Sbjct: 95 GIGNSRDGFHAVQRRLSGFHASQCGFCTP 123
Score = 46.0 bits (104), Expect = 3e-05
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 12/55 (21%)
Frame = +1
Query: 511 FCTPGWVMNMYSIYQSKNK------------KLSQKEIENSFAGNICRCTGYRPI 639
FCTPG M++YS ++ KL+ E E + +GN+CRCTGYRPI
Sbjct: 120 FCTPGMCMSIYSALAKADRCSSRPSPPPGFSKLTAAEAEKAVSGNLCRCTGYRPI 174
>03_06_0252 -
32656068-32656276,32656361-32656550,32656682-32656780,
32656917-32657012,32657200-32658153,32658476-32658694,
32658911-32659120,32659241-32659503,32659605-32661281,
32663639-32663792
Length = 1356
Score = 84.6 bits (200), Expect = 6e-17
Identities = 40/89 (44%), Positives = 52/89 (58%)
Frame = +2
Query: 257 IRNVAELRGTKAMCHEGGCGACVVAVRASLPPNNEMKTFAVNSCLVSILSCHEWEVITVE 436
+R +RG K C EGGCGACVV V +E+ F+ +SCL + S H V T E
Sbjct: 36 LRTRTPVRGPKLGCGEGGCGACVVVVSKYDAVADEVTEFSASSCLTLLGSLHHCAVTTSE 95
Query: 437 GIGNKSIGYHEIQTRLANFNGTQCGFVHP 523
GIGN G+H +Q RL+ F+ +QCGF P
Sbjct: 96 GIGNSRDGFHAVQRRLSGFHASQCGFCTP 124
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 12/55 (21%)
Frame = +1
Query: 511 FCTPGWVMNMYSIYQSKNK------------KLSQKEIENSFAGNICRCTGYRPI 639
FCTPG M++YS +K K++ E E + +GN+CRCTGYRPI
Sbjct: 121 FCTPGMCMSIYSALAKADKASGRPAPPTGFSKITAAEAEKAVSGNLCRCTGYRPI 175
>07_01_0464 -
3504264-3504475,3504842-3505031,3505310-3505408,
3505561-3505653,3505926-3506891,3507267-3507485,
3508038-3508247,3508371-3508630,3508956-3510737,
3510796-3511009
Length = 1414
Score = 67.3 bits (157), Expect = 1e-11
Identities = 36/96 (37%), Positives = 47/96 (48%)
Frame = +2
Query: 236 GCVAQRVIRNVAELRGTKAMCHEGGCGACVVAVRASLPPNNEMKTFAVNSCLVSILSCHE 415
GC + L + +C G CGACVV V A +E+ AV+SCL H
Sbjct: 50 GCGEGKATPQPTALPPPRLLCFRG-CGACVVVVSAYDAEADEVAHAAVSSCLTLARGLHH 108
Query: 416 WEVITVEGIGNKSIGYHEIQTRLANFNGTQCGFVHP 523
V T EG+G+ G H + RLA F+ +QCGF P
Sbjct: 109 RAVTTTEGLGSSRRGLHALHERLAGFHASQCGFCTP 144
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/24 (62%), Positives = 19/24 (79%)
Frame = +1
Query: 568 KLSQKEIENSFAGNICRCTGYRPI 639
+L+ E E + AGN+CRCTGYRPI
Sbjct: 173 RLTAAEAERAVAGNLCRCTGYRPI 196
>03_04_0157 +
17791540-17791681,17792809-17792908,17793386-17793477,
17793562-17793620,17794135-17795637,17796478-17796720,
17796831-17797145,17797571-17797573,17798399-17798638,
17798975-17799259,17799335-17799556,17800105-17800266,
17800411-17800545,17802452-17802688,17802787-17802960,
17803692-17803934
Length = 1384
Score = 66.5 bits (155), Expect = 2e-11
Identities = 25/43 (58%), Positives = 37/43 (86%)
Frame = +1
Query: 511 FCTPGWVMNMYSIYQSKNKKLSQKEIENSFAGNICRCTGYRPI 639
FCTPG+VM+MY++ +S + ++++IE+S AGN+CRCTGYRPI
Sbjct: 144 FCTPGFVMSMYALLRSSEQPPTEEQIEDSLAGNLCRCTGYRPI 186
Score = 63.7 bits (148), Expect = 1e-10
Identities = 39/97 (40%), Positives = 49/97 (50%), Gaps = 14/97 (14%)
Frame = +2
Query: 275 LRGTKAMCHEGGCGACVVAVRASLPPNNEMKTFAVNSCLVSILSCHEWEVITVEGIGNKS 454
L GTK C EGGCGAC V V + + FA+N+CL + S +ITVEGIGN+
Sbjct: 51 LPGTKLGCGEGGCGACTVMVSCYDQTTKKTQHFAINACLAPLYSVEGMHIITVEGIGNRQ 110
Query: 455 IGY-----HEIQT---------RLANFNGTQCGFVHP 523
E+ T RLA +G+QCGF P
Sbjct: 111 RAVWNYLCDEVVTCWLKTLRKERLAMAHGSQCGFCTP 147
>07_01_1149 +
10789733-10791209,10791326-10791588,10791745-10791954,
10792398-10792475,10792505-10792705,10792768-10792908,
10794749-10795714,10797824-10797919,10798450-10798638,
10798849-10798956
Length = 1242
Score = 50.8 bits (116), Expect = 1e-06
Identities = 27/54 (50%), Positives = 34/54 (62%), Gaps = 11/54 (20%)
Frame = +1
Query: 511 FCTPGWVMNMYS--IYQSKNKK---------LSQKEIENSFAGNICRCTGYRPI 639
FCTPG M+++S + K+KK LS E E SF+GN+CRCTGYRPI
Sbjct: 11 FCTPGMCMSIFSSLVNADKSKKPAPPKGFSKLSISEAERSFSGNMCRCTGYRPI 64
>08_02_0601 + 19177129-19177245,19178231-19179103
Length = 329
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/22 (68%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
Frame = -1
Query: 337 SDGDDAGSTAA--LVTHRLRTP 278
+DGDD STAA LVTH L TP
Sbjct: 289 NDGDDDDSTAAIDLVTHTLTTP 310
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,167,367
Number of Sequences: 37544
Number of extensions: 373519
Number of successful extensions: 912
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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