Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0925.Seq
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83318-1|CAB05902.1| 1358|Caenorhabditis elegans Hypothetical pr...    79   4e-15
AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical ...    76   3e-14
U50312-11|AAK71353.2| 1217|Caenorhabditis elegans Hypothetical p...    75   4e-14
Z82264-1|CAB05159.1| 1566|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AF039716-7|AAB96735.3|  617|Caenorhabditis elegans Sodium:neurot...    29   4.0  
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr...    28   5.3  
U00065-3|AAK68286.3|  981|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AC024810-11|AAK68516.2|  165|Caenorhabditis elegans Hypothetical...    27   9.2  

>Z83318-1|CAB05902.1| 1358|Caenorhabditis elegans Hypothetical
           protein F55B11.1 protein.
          Length = 1358

 Score = 78.6 bits (185), Expect = 4e-15
 Identities = 40/90 (44%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
 Frame = +2

Query: 257 IRNVAELRGTKAMCHEGGCGACVVAVRASLPPNNEMKTFAVNSCLVSILSCHEWEVITVE 436
           +R+  +L GTK  C+EGGCGAC + +  S   N E+K F+ NSCL+ +       V TVE
Sbjct: 40  LRDKLKLTGTKIGCNEGGCGACTIMI--SHIENGEIKHFSANSCLMPVCGVFGKAVTTVE 97

Query: 437 GIGNKSIG-YHEIQTRLANFNGTQCGFVHP 523
           GIG+ +    H +Q RLA  +G+QCGF  P
Sbjct: 98  GIGSVAKNRLHPVQERLAKAHGSQCGFCTP 127



 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 22/43 (51%), Positives = 30/43 (69%)
 Frame = +1

Query: 511 FCTPGWVMNMYSIYQSKNKKLSQKEIENSFAGNICRCTGYRPI 639
           FCTPG+VM MY++ ++ N   +  +I     GN+CRCTGYRPI
Sbjct: 124 FCTPGFVMAMYALLRN-NPNPTISDINLGLQGNLCRCTGYRPI 165


>AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical
           protein F15E6.6 protein.
          Length = 1228

 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 39/89 (43%), Positives = 51/89 (57%)
 Frame = +2

Query: 257 IRNVAELRGTKAMCHEGGCGACVVAVRASLPPNNEMKTFAVNSCLVSILSCHEWEVITVE 436
           +RN   LRGTK  C EG CG+C V +       N+    AVN+CLV +   H+  VITVE
Sbjct: 30  LRNKLGLRGTKLGCEEGVCGSCTVVLGTWDDSLNKAVYSAVNACLVPLFHVHKTFVITVE 89

Query: 437 GIGNKSIGYHEIQTRLANFNGTQCGFVHP 523
           G+G++    H IQ R+A  +  QCGF  P
Sbjct: 90  GVGSRD-KIHPIQDRMARGHAVQCGFCSP 117



 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 18/43 (41%), Positives = 31/43 (72%)
 Frame = +1

Query: 511 FCTPGWVMNMYSIYQSKNKKLSQKEIENSFAGNICRCTGYRPI 639
           FC+PG+VM+ Y++ ++ +   + ++I  +   N+CRCTGYRPI
Sbjct: 114 FCSPGFVMSAYALLRN-HPNPTIEQINAAIRANLCRCTGYRPI 155


>U50312-11|AAK71353.2| 1217|Caenorhabditis elegans Hypothetical
           protein B0222.9 protein.
          Length = 1217

 Score = 75.4 bits (177), Expect = 4e-14
 Identities = 39/89 (43%), Positives = 51/89 (57%)
 Frame = +2

Query: 257 IRNVAELRGTKAMCHEGGCGACVVAVRASLPPNNEMKTFAVNSCLVSILSCHEWEVITVE 436
           +RN   LRGTK  C EG CG+C V +       N+    AVN+CLV +   H+  VITVE
Sbjct: 30  LRNKLGLRGTKLGCEEGVCGSCTVVLGTWDDCQNKAVYRAVNACLVPLFHVHKTFVITVE 89

Query: 437 GIGNKSIGYHEIQTRLANFNGTQCGFVHP 523
           G+G++    H IQ R+A  +  QCGF  P
Sbjct: 90  GVGSRD-KIHPIQDRMARGHALQCGFCSP 117



 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 19/43 (44%), Positives = 30/43 (69%)
 Frame = +1

Query: 511 FCTPGWVMNMYSIYQSKNKKLSQKEIENSFAGNICRCTGYRPI 639
           FC+PG+VM+ Y+++ ++     Q +I  +   N+CRCTGYRPI
Sbjct: 114 FCSPGFVMSAYALFSNQPNPTIQ-QINAAIRANLCRCTGYRPI 155


>Z82264-1|CAB05159.1| 1566|Caenorhabditis elegans Hypothetical
           protein C49C3.4 protein.
          Length = 1566

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +2

Query: 293 MCHEGGCGACVVAVRASLPPNNEMKTFAVNSCLVSI-LSCHEWEVITVEGI 442
           +C  G  G    AV+ SLPP+N  K    +  +++I L    W V T   I
Sbjct: 54  ICPSGYLGIHCEAVKTSLPPDNHFKVGGTSFNIININLYTEYWGVSTYANI 104


>AF039716-7|AAB96735.3|  617|Caenorhabditis elegans
           Sodium:neurotransmitter symporterfamily protein 1
           protein.
          Length = 617

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = -1

Query: 613 KCYRQKSFQFLFGLIFCFSIGIYYTCS*PIRVYKTTLCTIEISQSSLNF-MVAN*FVTYS 437
           KC R + F  LF  +FCF + +Y+  +     Y+  L T  I   ++ F + A  F T  
Sbjct: 410 KCCR-RFFLALFVCLFCFGLTVYFATNAGRHAYE--LATRSIKYCTIYFILTAELFATAW 466

Query: 436 FHSDH 422
           F+  H
Sbjct: 467 FYCAH 471


>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
           protein C16A3.7 protein.
          Length = 1119

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/39 (30%), Positives = 15/39 (38%)
 Frame = +2

Query: 293 MCHEGGCGACVVAVRASLPPNNEMKTFAVNSCLVSILSC 409
           +CH G CG C V +          K  + N C     SC
Sbjct: 391 ICHSGDCGECTVILEQDCFCGKTPKEVSCNPCAHEKYSC 429


>U00065-3|AAK68286.3|  981|Caenorhabditis elegans Hypothetical
           protein D1044.8 protein.
          Length = 981

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = +2

Query: 230 RSGCVAQRVIRNVAELRGTKAMCHEGGCGACVVAVRASLPPNNEMKTFAVNSCLVSILSC 409
           R   V Q  +  +  L      C E  C +  + V   L P+ ++ T  +   L+ ILSC
Sbjct: 181 RQMTVLQHSLEILGRLSDWSTTCRENLCESNTIDVCLQLIPDGDILTQKLCISLLRILSC 240

Query: 410 HE 415
            E
Sbjct: 241 EE 242


>AC024810-11|AAK68516.2|  165|Caenorhabditis elegans Hypothetical
           protein Y54E10A.17 protein.
          Length = 165

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = +2

Query: 395 SILSCHEWEVITVEGIGNKSIGYHEIQTRLANFNGTQC 508
           S+ +C  W  +T   I + SIGYH            +C
Sbjct: 122 SLSTCTTWNFVTEGSIEDGSIGYHNAAPHTVEICANKC 159


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,735,990
Number of Sequences: 27780
Number of extensions: 334963
Number of successful extensions: 762
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)