Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0924.Seq
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    99   5e-22
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi...    28   1.1  
SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a...    27   2.6  
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S...    27   2.6  
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    27   3.5  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    27   3.5  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    26   4.6  
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ...    26   6.1  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   6.1  
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ...    25   8.1  

>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 99.1 bits (236), Expect = 5e-22
 Identities = 44/68 (64%), Positives = 52/68 (76%)
 Frame = +2

Query: 509 YRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVG 688
           YRPI + D F+VRG MR VEFKVV+  P  F IV+ DT+IH +GEPI RE+EE +L  VG
Sbjct: 163 YRPIRKGDLFVVRGSMRQVEFKVVDVAPDEFGIVSQDTIIHWEGEPINREDEESSLAEVG 222

Query: 689 YDDIGGCR 712
           YDDIGGCR
Sbjct: 223 YDDIGGCR 230



 Score = 97.9 bits (233), Expect = 1e-21
 Identities = 43/85 (50%), Positives = 60/85 (70%)
 Frame = +3

Query: 255 LLKGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 434
           ++KGKRRK+TV IVL+D+   D   R+             D+V+I PCP +KY +R+ +L
Sbjct: 78  VVKGKRRKDTVLIVLTDEEMEDGVARINRVVRNNLRVRLGDIVTINPCPDIKYAERISVL 137

Query: 435 PIDDSVEGLTGNLFEVYLKPYFMEA 509
           P+ D+VEGLTG+LF+VYLKPYF+EA
Sbjct: 138 PLADTVEGLTGSLFDVYLKPYFVEA 162



 Score = 71.7 bits (168), Expect = 9e-14
 Identities = 34/60 (56%), Positives = 43/60 (71%)
 Frame = +1

Query: 85  NKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVCSK 264
           N   D  S +D +TAILR+K +PN L+V++A +DDNSV+ LS   ME LQLFRGDTV  K
Sbjct: 21  NPPKDTYSAEDTATAILRKKRKPNSLVVDDATNDDNSVITLSSNTMETLQLFRGDTVVVK 80


>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 110 LMIYRPRSSVARTDPTVSLSKKQSAMTTQSWH-FHRPKW 223
           L + R    +   DP ++ +  Q  + T+SWH FH  +W
Sbjct: 259 LALIRGCDGLLSDDPVMARALSQGPIVTKSWHYFHYSEW 297


>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
 Frame = -2

Query: 453 QLNHQLAVCGLV---FHISLKDTELWI 382
           QLN ++  CG++   F++ LKD E W+
Sbjct: 64  QLNGRINKCGVISPRFNVKLKDIEKWV 90


>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
 Frame = -2

Query: 453 QLNHQLAVCGLV---FHISLKDTELWI 382
           QLN ++  CG++   F++ LKD E W+
Sbjct: 64  QLNGRINKCGVISPRFNVKLKDIEKWV 90


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 608 VAPDTVIHCDGEPIKREEEEEALNAVGYDD 697
           V PD   + D E I+REEE++A  A   ++
Sbjct: 200 VMPDLYFYRDPEEIEREEEQKAAAAAAAEE 229


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -2

Query: 423 LVFHISLKDTELWIP-HQKDAHEGCFSRHGSSEFSHQG 313
           LV  + LKD   WI    + + E  F   G ++FS+QG
Sbjct: 435 LVSDLYLKDLWSWIHLSHRQSEESLFGDTGDTDFSYQG 472


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +2

Query: 146 TDPTVSLSKKQSAMTTQSWHFHRPKWSNFNSSVVTQFAQRQTPQGNR 286
           T P VS+  + +  + QS  F R   S +N  VVT  +  +TP+ +R
Sbjct: 74  TPPPVSMGYRYARSSKQS--FQRED-SGYNDDVVTNSSSHRTPRHHR 117


>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 409

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +1

Query: 109 PD-DLSTAILRRKDRPNRLIVEEAVSD 186
           PD D + + + RK+ PNRL++  A+S+
Sbjct: 233 PDADANISKIARKEDPNRLVLASAISE 259


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +1

Query: 82  LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLF 240
           L  +A N   + L+T   +RK + N  ++ +A ++ N+  +++ A  E+ QL+
Sbjct: 768 LGSLAGNLPQESLTTKS-KRKSKVNLELMFDATAEKNNENSMNSAVFEKSQLY 819


>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
 Frame = +2

Query: 116 IYRPRSSVARTDPTVSLSKKQSAMTTQSWHF-HRPKWSNFNSSVVTQFAQRQ-----TPQ 277
           +Y P+ S+    P  +  +K+      +W F H    + +N+ +     Q+Q      P 
Sbjct: 248 VYHPQPSLEAQLPAAARKRKKEPPKDATWLFQHAKATAAYNNDITKYLVQKQDIGYFEPH 307

Query: 278 GNRLH 292
            N LH
Sbjct: 308 TNLLH 312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,931,171
Number of Sequences: 5004
Number of extensions: 60506
Number of successful extensions: 176
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)