Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0924.Seq
(712 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0364 - 2834446-2834742,2834838-2835197,2835281-2835562,283... 122 2e-28
10_08_0170 + 15397381-15397418,15397519-15397681,15398419-153986... 118 6e-27
08_02_0657 - 19749835-19751942,19753123-19753561 97 9e-21
03_05_0754 + 27452203-27452242,27452360-27455611,27456480-274565... 30 2.1
05_01_0384 + 2997465-2999777,2999960-3000035,3003027-3003102,300... 28 6.4
07_03_0500 - 18798893-18799893,18801616-18801701,18801742-188018... 28 8.4
>03_01_0364 -
2834446-2834742,2834838-2835197,2835281-2835562,
2835634-2835705,2835798-2836019,2836105-2836871,
2837206-2837434,2838027-2838189,2838313-2838350
Length = 809
Score = 122 bits (295), Expect = 2e-28
Identities = 54/85 (63%), Positives = 65/85 (76%)
Frame = +3
Query: 255 LLKGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 434
LLKGK+RK+T+CIVL+DD C + KIRM DVVS+ CP VKYGKRVHIL
Sbjct: 65 LLKGKKRKDTICIVLADDTCEEPKIRMNKVVRKNLRVRLGDVVSVHQCPDVKYGKRVHIL 124
Query: 435 PIDDSVEGLTGNLFEVYLKPYFMEA 509
PIDD+VEG+TGNLF+ +LKPYF+EA
Sbjct: 125 PIDDTVEGITGNLFDAFLKPYFLEA 149
Score = 110 bits (265), Expect = 9e-25
Identities = 48/68 (70%), Positives = 58/68 (85%)
Frame = +2
Query: 509 YRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVG 688
YRP+ + D F+VRGGMR+VEFKV+ETDP+ +CIVAPDT I CDGEPIKRE+EE L+ VG
Sbjct: 150 YRPLRKGDLFLVRGGMRSVEFKVIETDPAEYCIVAPDTEIFCDGEPIKREDEER-LDEVG 208
Query: 689 YDDIGGCR 712
YDD+GG R
Sbjct: 209 YDDVGGVR 216
Score = 71.7 bits (168), Expect = 5e-13
Identities = 34/57 (59%), Positives = 41/57 (71%)
Frame = +1
Query: 94 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVCSK 264
+D K D STAIL RK PNRL+V+EA +DDNSV+ + ME+LQLFRGDTV K
Sbjct: 11 SDPKGKKDFSTAILERKKSPNRLVVDEATNDDNSVIGMHPDTMEKLQLFRGDTVLLK 67
>10_08_0170 +
15397381-15397418,15397519-15397681,15398419-15398647,
15398777-15399543,15399650-15399871,15399961-15400032,
15400100-15400408,15400491-15400850,15401199-15401492
Length = 817
Score = 118 bits (283), Expect = 6e-27
Identities = 52/85 (61%), Positives = 64/85 (75%)
Frame = +3
Query: 255 LLKGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 434
LLKGK+RK+T+CIVL+D+ C + KIRM DVVS+ C VKYGKRVHIL
Sbjct: 65 LLKGKKRKDTICIVLADETCEEPKIRMNKVVRKNLRVRLGDVVSVHQCQDVKYGKRVHIL 124
Query: 435 PIDDSVEGLTGNLFEVYLKPYFMEA 509
PIDD+VEG+TGNLF+ +LKPYF+EA
Sbjct: 125 PIDDTVEGITGNLFDAFLKPYFLEA 149
Score = 111 bits (266), Expect = 7e-25
Identities = 48/68 (70%), Positives = 58/68 (85%)
Frame = +2
Query: 509 YRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVG 688
YRP+ + D F+VRGGMR+VEFKV+ETDP+ +CIVAPDT I CDGEPIKRE+EE L+ VG
Sbjct: 150 YRPVRKGDLFLVRGGMRSVEFKVIETDPTEYCIVAPDTEIFCDGEPIKREDEER-LDEVG 208
Query: 689 YDDIGGCR 712
YDD+GG R
Sbjct: 209 YDDVGGVR 216
Score = 75.4 bits (177), Expect = 4e-14
Identities = 38/57 (66%), Positives = 42/57 (73%)
Frame = +1
Query: 94 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVCSK 264
AD K D STAIL RK PNRL+V+EA +DDNSVVAL ME+LQLFRGDTV K
Sbjct: 11 ADPKGKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLK 67
>08_02_0657 - 19749835-19751942,19753123-19753561
Length = 848
Score = 97.5 bits (232), Expect = 9e-21
Identities = 39/84 (46%), Positives = 58/84 (69%)
Frame = +3
Query: 258 LKGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILP 437
L+G+RR+E VC D++CPD ++R+ D+V++ PCP+++ KRV + P
Sbjct: 69 LRGRRRREAVCYAQKDESCPDGRLRLSRGVRSNLHVRLGDLVTVKPCPTIRNAKRVQLRP 128
Query: 438 IDDSVEGLTGNLFEVYLKPYFMEA 509
DDSVEG++G+LFE YLKPYFM+A
Sbjct: 129 FDDSVEGISGDLFEPYLKPYFMDA 152
Score = 77.4 bits (182), Expect = 1e-14
Identities = 39/69 (56%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Frame = +2
Query: 512 RPIHRDDTFMVRGGMRAVEFKVVETDP-SPFCIVAPDTVIHCD-GEPIKREEEEEALNAV 685
RP+ + D F+VRG M AVEFKV++T+P + IVA DT I CD G+P+KRE+EE L+
Sbjct: 154 RPVKKGDRFLVRGHMHAVEFKVMDTEPNNEPVIVAGDTEIFCDEGDPVKREDEER-LDGP 212
Query: 686 GYDDIGGCR 712
GYDD+GG R
Sbjct: 213 GYDDVGGVR 221
Score = 50.0 bits (114), Expect = 2e-06
Identities = 29/61 (47%), Positives = 39/61 (63%), Gaps = 5/61 (8%)
Frame = +1
Query: 115 DLSTAILR--RKDRPNRLIVEEA---VSDDNSVVALSQAKMEQLQLFRGDTVCSKANAAR 279
D STAIL +K PNRL+ ++A V+ DNS V LS+A ME+L +FRGD V + R
Sbjct: 16 DYSTAILECAKKKSPNRLMADDAEGGVAVDNSTVTLSEATMEELGIFRGDLVTLRGRRRR 75
Query: 280 K 282
+
Sbjct: 76 E 76
>03_05_0754 + 27452203-27452242,27452360-27455611,27456480-27456533,
27456774-27456872,27456948-27457012,27457476-27457575,
27458326-27458408,27458494-27458569,27458920-27459698
Length = 1515
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +1
Query: 430 YCQLMIQLRVLLAIYSKYT*-SRTSWRLPSDPS*RHLHGPGGHARRRVQSGRNRSITILH 606
+C+ IQ+ A + ++ S L + S HLHG G RR + +GR R+I +L
Sbjct: 1228 FCEKKIQIPPESACFIEFPDESLPHETLQASSSAVHLHGHHGRLRRFLAAGRLRAIDVLG 1287
Query: 607 RG 612
G
Sbjct: 1288 HG 1289
>05_01_0384 + 2997465-2999777,2999960-3000035,3003027-3003102,
3003571-3004442,3004592-3004773,3005206-3005295,
3005388-3005675,3005776-3005997,3006053-3006133,
3006634-3006861
Length = 1475
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 140 ARTDPTVSLSKKQSAMTTQSWHFHRPKWSNFNSSVVTQFAQRQTPQ 277
A + +V SK Q+ + WH + W N S T+F Q+ Q
Sbjct: 1340 AEVESSVLCSKWQNEIKDPEWHPFKSVWVNGKESCRTEFQTLQSTQ 1385
>07_03_0500 -
18798893-18799893,18801616-18801701,18801742-18801805,
18802640-18802853
Length = 454
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 163 IVEEAVSDDNSVVALSQAKMEQLQLFRGDTVCSKANAARKPFAS 294
++EEA+ DN +A S+ + + G TV N R+ FA+
Sbjct: 377 LIEEALGLDNGAMAASRQVLREYGNMSGTTVIFVLNELRRRFAA 420
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,694,339
Number of Sequences: 37544
Number of extensions: 417711
Number of successful extensions: 1267
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1262
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -