Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0924.Seq
         (712 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    27   0.58 
AJ439060-7|CAD27758.1|  849|Anopheles gambiae putative V-ATPase ...    25   3.1  
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    23   9.5  

>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1099

 Score = 27.1 bits (57), Expect = 0.58
 Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +2

Query: 116  IYRPRSSVARTDPTVSLSKKQSAMTTQSWHFHRPKW-SNFNSSVVTQFAQRQTP 274
            +Y+  S+V RTD   ++ K++   T + W   + +W +  ++S  T++A R  P
Sbjct: 849  VYQRLSAVNRTDTRANIRKQERQATIEQW---QQQWDAEADTSRHTRWAHRVLP 899


>AJ439060-7|CAD27758.1|  849|Anopheles gambiae putative V-ATPase
           protein.
          Length = 849

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 456 PQLNHQLAVCGLVFHISLKDTELWIPHQKDAHEGCFSRHGSS 331
           P L    ++  L+ H  L+     IP+  D H+G  S H SS
Sbjct: 673 PSLKEDNSLLSLIGHFFLQTP---IPNNGDVHQGGDSNHTSS 711


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
            transcriptase protein.
          Length = 1049

 Score = 23.0 bits (47), Expect = 9.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 104  KVLMIYRPRSSVARTDPTVSLS 169
            + L + +PRSS  R+DP   +S
Sbjct: 998  ETLRLAQPRSSAGRSDPMFRMS 1019


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 747,987
Number of Sequences: 2352
Number of extensions: 15711
Number of successful extensions: 22
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 72758970
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)