Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0924.Seq
         (712 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49886-1|CAA90050.1|  809|Caenorhabditis elegans Hypothetical pr...   118   4e-27
Z48334-9|CAA88314.1|  810|Caenorhabditis elegans Hypothetical pr...   117   7e-27
Z48045-12|CAA88105.1|  810|Caenorhabditis elegans Hypothetical p...   117   7e-27
Z69904-3|CAA93780.1|  372|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z96102-4|CAB54263.1| 1192|Caenorhabditis elegans Hypothetical pr...    28   7.6  
Z81027-5|CAB54179.1| 1192|Caenorhabditis elegans Hypothetical pr...    28   7.6  
Z66562-5|CAA91466.1|  250|Caenorhabditis elegans Hypothetical pr...    28   7.6  
AC024878-2|AAK85512.1|  345|Caenorhabditis elegans Hypothetical ...    28   7.6  
AB107358-1|BAD89379.1|  250|Caenorhabditis elegans troponin I 1 ...    28   7.6  

>Z49886-1|CAA90050.1|  809|Caenorhabditis elegans Hypothetical
           protein C06A1.1 protein.
          Length = 809

 Score =  118 bits (284), Expect = 4e-27
 Identities = 49/85 (57%), Positives = 67/85 (78%)
 Frame = +3

Query: 255 LLKGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 434
           +LKGK+RKE+V I++SD++CP+EK+RM             DVVSI P P++ YG R+H+L
Sbjct: 64  ILKGKKRKESVAIIVSDESCPNEKVRMNRVVRNNLRIRLGDVVSITPAPNLSYGTRIHVL 123

Query: 435 PIDDSVEGLTGNLFEVYLKPYFMEA 509
           PIDD++EGLTGNLF+V+LKPYF+EA
Sbjct: 124 PIDDTIEGLTGNLFDVFLKPYFLEA 148



 Score =  110 bits (264), Expect = 1e-24
 Identities = 45/68 (66%), Positives = 58/68 (85%)
 Frame = +2

Query: 509 YRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVG 688
           YRP+H+ D F V+  MR VEFKVVET+P+P CIV+PDT+IH +G+PIKREEEEE++N +G
Sbjct: 149 YRPLHKGDIFTVQAAMRTVEFKVVETEPAPACIVSPDTMIHYEGDPIKREEEEESMNDIG 208

Query: 689 YDDIGGCR 712
           YDD+GG R
Sbjct: 209 YDDLGGVR 216



 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 35/63 (55%), Positives = 47/63 (74%)
 Frame = +1

Query: 103 KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVCSKANAARK 282
           K  D+LSTAIL+ K +PNRLIV+++  DDNSV+A+SQAKM++L LFRGD V  K    ++
Sbjct: 13  KKNDELSTAILKDKVKPNRLIVDQSEQDDNSVIAVSQAKMDELGLFRGDAVILKGKKRKE 72

Query: 283 PFA 291
             A
Sbjct: 73  SVA 75


>Z48334-9|CAA88314.1|  810|Caenorhabditis elegans Hypothetical
           protein C41C4.8 protein.
          Length = 810

 Score =  117 bits (282), Expect = 7e-27
 Identities = 51/68 (75%), Positives = 58/68 (85%)
 Frame = +2

Query: 509 YRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVG 688
           YRP+H+ D F V+  MR VEFKVVETDP+P CIVAPDTVIH +G+PIKREEEEEALN VG
Sbjct: 148 YRPVHKGDIFTVQAAMRTVEFKVVETDPAPACIVAPDTVIHYEGDPIKREEEEEALNEVG 207

Query: 689 YDDIGGCR 712
           YDD+GG R
Sbjct: 208 YDDLGGVR 215



 Score =  106 bits (254), Expect = 2e-23
 Identities = 48/85 (56%), Positives = 65/85 (76%)
 Frame = +3

Query: 255 LLKGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 434
           +LKGK+R+ETV IVL+ DNCP++KI+M             DVVSI+    ++YGKRVH+L
Sbjct: 64  ILKGKKRRETVSIVLNADNCPNDKIKMNKVVRNNLRSRLGDVVSISSA-QLEYGKRVHVL 122

Query: 435 PIDDSVEGLTGNLFEVYLKPYFMEA 509
           PIDD++EGLTGNLF+V+L+PYF +A
Sbjct: 123 PIDDTIEGLTGNLFDVFLRPYFTDA 147



 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 34/60 (56%), Positives = 47/60 (78%)
 Frame = +1

Query: 103 KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVCSKANAARK 282
           K  D+L+TAIL+ K RPNRLI++++ +DDNS+V LSQAKM++L LFRGD+V  K    R+
Sbjct: 13  KKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRE 72


>Z48045-12|CAA88105.1|  810|Caenorhabditis elegans Hypothetical
           protein C41C4.8 protein.
          Length = 810

 Score =  117 bits (282), Expect = 7e-27
 Identities = 51/68 (75%), Positives = 58/68 (85%)
 Frame = +2

Query: 509 YRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVG 688
           YRP+H+ D F V+  MR VEFKVVETDP+P CIVAPDTVIH +G+PIKREEEEEALN VG
Sbjct: 148 YRPVHKGDIFTVQAAMRTVEFKVVETDPAPACIVAPDTVIHYEGDPIKREEEEEALNEVG 207

Query: 689 YDDIGGCR 712
           YDD+GG R
Sbjct: 208 YDDLGGVR 215



 Score =  106 bits (254), Expect = 2e-23
 Identities = 48/85 (56%), Positives = 65/85 (76%)
 Frame = +3

Query: 255 LLKGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 434
           +LKGK+R+ETV IVL+ DNCP++KI+M             DVVSI+    ++YGKRVH+L
Sbjct: 64  ILKGKKRRETVSIVLNADNCPNDKIKMNKVVRNNLRSRLGDVVSISSA-QLEYGKRVHVL 122

Query: 435 PIDDSVEGLTGNLFEVYLKPYFMEA 509
           PIDD++EGLTGNLF+V+L+PYF +A
Sbjct: 123 PIDDTIEGLTGNLFDVFLRPYFTDA 147



 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 34/60 (56%), Positives = 47/60 (78%)
 Frame = +1

Query: 103 KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVCSKANAARK 282
           K  D+L+TAIL+ K RPNRLI++++ +DDNS+V LSQAKM++L LFRGD+V  K    R+
Sbjct: 13  KKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRE 72


>Z69904-3|CAA93780.1|  372|Caenorhabditis elegans Hypothetical
           protein ZK20.3 protein.
          Length = 372

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +2

Query: 584 TDPSPFCIVAPDTVIHCDGEPIKREEEEE--ALNAVGYD 694
           ++P+P   VAP+     + E +  E+EE   A+  +GYD
Sbjct: 153 SNPAPAADVAPEAAAPAEAEALTDEQEENVLAITGMGYD 191


>Z96102-4|CAB54263.1| 1192|Caenorhabditis elegans Hypothetical
           protein H39E23.1a protein.
          Length = 1192

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/49 (36%), Positives = 22/49 (44%)
 Frame = -1

Query: 559 AHAPPDHEGVVTMDRTVASMKYGFKYTSNRLPVRPSTESSIGSMWTRFP 413
           ++ PP      T   T  S   G K  + + P RPSTESS  S   R P
Sbjct: 38  SNQPPGQIPHSTNSGTRKSSGSGLKTANLKHPARPSTESSTSSSHHRRP 86


>Z81027-5|CAB54179.1| 1192|Caenorhabditis elegans Hypothetical
           protein H39E23.1a protein.
          Length = 1192

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/49 (36%), Positives = 22/49 (44%)
 Frame = -1

Query: 559 AHAPPDHEGVVTMDRTVASMKYGFKYTSNRLPVRPSTESSIGSMWTRFP 413
           ++ PP      T   T  S   G K  + + P RPSTESS  S   R P
Sbjct: 38  SNQPPGQIPHSTNSGTRKSSGSGLKTANLKHPARPSTESSTSSSHHRRP 86


>Z66562-5|CAA91466.1|  250|Caenorhabditis elegans Hypothetical
           protein F42E11.4 protein.
          Length = 250

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +1

Query: 82  LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQL 231
           L K+  NK+ +DL T  LR++    +++ E  V+  N       AK+E +
Sbjct: 61  LRKLLMNKAAEDLKTQQLRKEQERVKVLAERTVALPNVDSIDDHAKLEAI 110


>AC024878-2|AAK85512.1|  345|Caenorhabditis elegans Hypothetical
           protein Y97E10AL.2 protein.
          Length = 345

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
 Frame = -1

Query: 700 DVIIADSI*CFLFFLTFNRFTVTVYYGIRSH----DAKW*WICFDHFELDGAHAPPDHEG 533
           D ++ DS    +F+   N F  T Y+ +  +    D  +  +CFD+     +   P  +G
Sbjct: 105 DDMMRDSENQIIFYAHGNSFDRTFYHRVEMYNLLSDCNYHVVCFDYRGYGDSEGTPTEKG 164

Query: 532 VVTMDRTV 509
           +V   +TV
Sbjct: 165 IVEDTKTV 172


>AB107358-1|BAD89379.1|  250|Caenorhabditis elegans troponin I 1
           protein.
          Length = 250

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +1

Query: 82  LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQL 231
           L K+  NK+ +DL T  LR++    +++ E  V+  N       AK+E +
Sbjct: 61  LRKLLMNKAAEDLKTQQLRKEQERVKVLAERTVALPNVDSIDDHAKLEAI 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,512,913
Number of Sequences: 27780
Number of extensions: 351700
Number of successful extensions: 966
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)