Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0923.Seq
         (685 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0085 + 1061962-1062141,1062283-1062431,1062734-1062819,106...    31   1.1  
11_08_0079 + 28189782-28189907,28190445-28190553,28190876-281909...    30   2.0  
11_03_0223 - 11883590-11883847,11883977-11884087                       29   3.4  
01_07_0306 + 42638683-42638990,42639074-42639314,42639935-426402...    29   4.5  
02_05_1011 + 33487670-33487958,33490794-33492100,33492541-334928...    28   6.0  
02_01_0362 + 2607097-2607371,2607766-2608612,2608842-2608910,260...    28   7.9  

>10_01_0085 +
           1061962-1062141,1062283-1062431,1062734-1062819,
           1062986-1063113,1063213-1063341,1063428-1063495,
           1063575-1063812
          Length = 325

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/58 (32%), Positives = 25/58 (43%)
 Frame = +2

Query: 41  CTRATLKESACSPWPRGPGNPLKLLRAGDWGLQLSPINEEFLVSASHKLALITSLPFV 214
           CT     E      P   G PL+LL  GDWG +    N+  +     K+A  T + FV
Sbjct: 17  CTSPATAELTRHEHPVAAGAPLRLLVVGDWG-RKGGYNQTRVAEQMGKVAEETEIDFV 73


>11_08_0079 +
           28189782-28189907,28190445-28190553,28190876-28190958,
           28191500-28191562,28191658-28192854,28193247-28193310,
           28193338-28193426,28194404-28194463,28195442-28195547,
           28196057-28196069,28196940-28197111
          Length = 693

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +2

Query: 92  PGNPLKLLRAGDWGLQLSPINEEFLVSASHKLALITSLPFVHTARRYYRLNDLVSL 259
           PG  L + R G+ GL  + I +E  +S +HK   + SL   H     Y + +L S+
Sbjct: 284 PGQRLIIARGGEGGLGNACILKEMWLSKAHKEEEMASLSTGHPGTETYLILELKSI 339


>11_03_0223 - 11883590-11883847,11883977-11884087
          Length = 122

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +2

Query: 158 EFLVSASHKLALITSLPFVHTARRYYRLNDLVSLRTDTRWLH 283
           E   +  H +     +PF+ T RR  R  D  S+   +RW+H
Sbjct: 3   EIATNGEHGIEHDKKVPFLWTYRRDQRKIDRSSMENSSRWIH 44


>01_07_0306 + 42638683-42638990,42639074-42639314,42639935-42640236,
            42640431-42640607,42640853-42641617,42641697-42641791,
            42641889-42641951,42642047-42642135,42642229-42642324,
            42642457-42643104,42643596-42643628,42643838-42643912,
            42644442-42644603,42644604-42644674,42644758-42644815,
            42645196-42645394,42645487-42645552,42645699-42646183
          Length = 1310

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 158  PRLWGIIANPNPQHEGVSAGCPGL*ARENML 66
            P LW +++ P P+++ +  G PG   R  +L
Sbjct: 1110 PFLWNVLSAPLPKNDAIDGGLPGSADRPKLL 1140


>02_05_1011 +
           33487670-33487958,33490794-33492100,33492541-33492853,
           33493190-33494247
          Length = 988

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 91  PGQPAETPSCWGLGFAIIPHKRGIPSKR 174
           PG+P +TP  W +  + +P +  +P+KR
Sbjct: 443 PGEPRDTPRGWTVSPSGLPLRVSVPTKR 470


>02_01_0362 +
           2607097-2607371,2607766-2608612,2608842-2608910,
           2609968-2610202,2610454-2610536,2610924-2611046,
           2611326-2611379
          Length = 561

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 132 PQSPARRSFSGLPGPLGQGEHADSFSVARVQPRTS 28
           PQ P    F GLP  +G  +H D  ++A   P  S
Sbjct: 278 PQKPVENFFKGLPYAVGD-QHGDWIAIAHQHPLLS 311


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,080,159
Number of Sequences: 37544
Number of extensions: 358438
Number of successful extensions: 854
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)