Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0923.Seq
         (685 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK129846-1|BAC85241.1|  236|Homo sapiens protein ( Homo sapiens ...    31   5.0  
AK128694-1|BAC87575.1|  291|Homo sapiens protein ( Homo sapiens ...    31   5.0  

>AK129846-1|BAC85241.1|  236|Homo sapiens protein ( Homo sapiens
           cDNA FLJ26336 fis, clone HRT02842. ).
          Length = 236

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 382 TCVVLCVICKYFIYLFIYIYACIHSIVLNFYRL 480
           T V +CV     I+++I+IY CIH  V ++  +
Sbjct: 170 THVYICVFIYICIHVYIHIYICIHICVYSYIHM 202


>AK128694-1|BAC87575.1|  291|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46861 fis, clone UTERU3011092. ).
          Length = 291

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +1

Query: 382 TCVVLCVICKYFIYL--FIYIYACIHSIVLNFYRL 480
           TC+  C+    ++Y+  +I+IY CIH  V ++  +
Sbjct: 192 TCIHRCIFIYTYVYICVYIHIYICIHVCVYSYIHM 226


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,860,618
Number of Sequences: 237096
Number of extensions: 2037223
Number of successful extensions: 4694
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4660
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7783251346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)