Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0923.Seq
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032647-1|CAA21688.2|  470|Caenorhabditis elegans Hypothetical ...    29   2.3  
U28737-8|ABA61869.1|  537|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U28737-7|ABA61870.1|  501|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AL034364-2|CAA22252.1|  630|Caenorhabditis elegans Hypothetical ...    28   5.4  
Z98877-14|CAD56615.1|  338|Caenorhabditis elegans Hypothetical p...    28   7.1  
AF024494-12|AAB70332.3|  332|Caenorhabditis elegans Serpentine r...    28   7.1  
AL110487-1|CAB54424.1|  610|Caenorhabditis elegans Hypothetical ...    27   9.4  

>AL032647-1|CAA21688.2|  470|Caenorhabditis elegans Hypothetical
           protein Y57A10B.1 protein.
          Length = 470

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 346 QGFRREPAEGSLTCVVLCVICKYFIYLFIYIYACIHS 456
           + +RRE AE  L+ V L     +F+  F+ +YA + S
Sbjct: 370 ESYRREEAENVLSTVTLIAAMVFFLSFFLAMYAHVKS 406


>U28737-8|ABA61869.1|  537|Caenorhabditis elegans Hypothetical
           protein F14B8.5a protein.
          Length = 537

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 640 HCNFGVSNGIL*CAYSFMRVLPCACSTQQY 551
           +CNF  SN    C +SF+ V+ CA  + QY
Sbjct: 172 NCNFVPSNHQNQCQFSFVLVISCADQSIQY 201


>U28737-7|ABA61870.1|  501|Caenorhabditis elegans Hypothetical
           protein F14B8.5b protein.
          Length = 501

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 640 HCNFGVSNGIL*CAYSFMRVLPCACSTQQY 551
           +CNF  SN    C +SF+ V+ CA  + QY
Sbjct: 136 NCNFVPSNHQNQCQFSFVLVISCADQSIQY 165


>AL034364-2|CAA22252.1|  630|Caenorhabditis elegans Hypothetical
           protein W06D4.4 protein.
          Length = 630

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +1

Query: 445 CIHSIVLNFYRLSDFSRSRARC 510
           CI+S   NFY+L  FS+SR+ C
Sbjct: 307 CIYSRNTNFYQLLFFSKSRSYC 328


>Z98877-14|CAD56615.1|  338|Caenorhabditis elegans Hypothetical
           protein Y69H2.14 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 6/38 (15%)
 Frame = -2

Query: 144 DNCKPQSPARRSFSGLPGPLGQ----GE--HADSFSVA 49
           ++C+  +PAR+   G PGP GQ    GE  H+D+ S A
Sbjct: 190 NDCQTCAPARQGAPGPPGPAGQPGQPGEPGHSDTSSTA 227


>AF024494-12|AAB70332.3|  332|Caenorhabditis elegans Serpentine
           receptor, class u protein28 protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 367 AEGSLTCVVLCVICKYFIYLFIYIYACIHSIVLNFYRL 480
           AE SLT   + +IC Y     I I A ++SI  ++Y +
Sbjct: 252 AEVSLTVTTVSMICSYLSNSMIVIAAQLNSIEYSYYAI 289


>AL110487-1|CAB54424.1|  610|Caenorhabditis elegans Hypothetical
           protein Y39E4B.1 protein.
          Length = 610

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 170 LLGIPRLWGIIANPNPQHEGVSAGCPGL*ARENM 69
           L G+P ++G++  P+   EG++    G    ENM
Sbjct: 300 LYGVPGVYGVVTLPSGVREGINMFLEGFIRTENM 333


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,471,610
Number of Sequences: 27780
Number of extensions: 307558
Number of successful extensions: 929
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)