Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0922X.Seq
(517 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0318 + 16336356-16336358,16337254-16337484,16337580-163376... 34 0.078
12_02_0118 - 13869237-13869307,13869375-13869465,13870321-138704... 33 0.14
04_04_0819 - 28312667-28313219,28315157-28316430 30 0.96
02_05_0264 + 27263562-27264830 30 0.96
12_02_1257 - 27372420-27372724,27373486-27373662,27373862-27373886 29 1.7
11_08_0039 - 27884947-27885077,27885211-27886317,27886437-278866... 29 1.7
02_05_0235 - 27068516-27069032,27069697-27069788,27070056-270702... 28 3.9
05_01_0505 + 4207841-4208455,4209982-4210143,4210247-4210717 28 5.1
01_05_0490 + 22672241-22674679 28 5.1
08_02_1017 - 23616244-23616381,23616471-23616537,23617160-236172... 27 6.8
03_01_0150 + 1191410-1191697,1191818-1191941,1192063-1192121,119... 27 6.8
06_01_0541 - 3874476-3874694,3874816-3874868,3875944-3876055,387... 27 8.9
06_01_0531 - 3836420-3836638,3836760-3836812,3837888-3837999,383... 27 8.9
05_07_0066 + 27453611-27453627,27454729-27454872,27455998-274566... 27 8.9
02_01_0667 - 4958924-4959523 27 8.9
>11_04_0318 +
16336356-16336358,16337254-16337484,16337580-16337654,
16337741-16337839,16339010-16339121,16339586-16339713,
16340022-16340141,16340967-16341047,16341460-16341537,
16341616-16341708,16341880-16341934,16342795-16342871,
16343008-16343079,16343159-16343242,16343620-16343739,
16343824-16343892,16344721-16344798,16345684-16345822,
16345990-16346154,16346239-16346384,16346501-16346680,
16346834-16346922,16346997-16347028,16347120-16347226
Length = 810
Score = 33.9 bits (74), Expect = 0.078
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +3
Query: 324 LDPDQMPSPI-EVMLDDQQNRGGVFVTNGKGLVPPLVTTDFIVDDKGNASAPL 479
+DP+Q+P P+ E + + R G G+ +PP +++FIV D GN S L
Sbjct: 49 IDPNQIPRPMAETSVIIFETRQG-----GQAAIPPAASSEFIVKDTGNCSPRL 96
>12_02_0118 -
13869237-13869307,13869375-13869465,13870321-13870440,
13870668-13870795,13871159-13871270,13871719-13871817,
13871918-13871992,13872099-13872320,13873177-13874034
Length = 591
Score = 33.1 bits (72), Expect = 0.14
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +3
Query: 324 LDPDQMPSPI-EVMLDDQQNRGGVFVTNGKGLVPPLVTTDFIVDDKGNASAPL 479
+DP+Q+P P+ E + + R G G+ VPP +++FIV D GN + L
Sbjct: 331 IDPNQIPRPMPETSVVIFETRQG-----GQAAVPPAASSEFIVKDTGNCNPRL 378
>04_04_0819 - 28312667-28313219,28315157-28316430
Length = 608
Score = 30.3 bits (65), Expect = 0.96
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 318 SVVVDTADLGSLAVVLGMEVGMW 250
S+ D DLG++ VVLG +V W
Sbjct: 188 SIFADVVDLGAMGVVLGQDVSTW 210
>02_05_0264 + 27263562-27264830
Length = 422
Score = 30.3 bits (65), Expect = 0.96
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 318 SVVVDTADLGSLAVVLGMEVGMW 250
S+ D DLG++ VVLG +V +W
Sbjct: 185 SIFADVVDLGAMGVVLGEDVSVW 207
>12_02_1257 - 27372420-27372724,27373486-27373662,27373862-27373886
Length = 168
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +2
Query: 218 NNIKDNHQATRHIPTSIPSTTAKLPRSAVSTTTENPRSGPNAQSDRGDVG*PTEPGW 388
++ + + T+ +P + P+TT + + T+N SG N S G +G GW
Sbjct: 14 SSFRGSSTGTKAVPRAAPATTPAAKSTGTAPATKNTSSGSN-DSVIGSIGSAFFDGW 69
>11_08_0039 -
27884947-27885077,27885211-27886317,27886437-27886681,
27886810-27886961,27887077-27887193
Length = 583
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 495 HGTPNVAGHWHSLCRQR*NRWSPAAELI 412
HG N+ HWH + + R N WS E I
Sbjct: 81 HGNKNITIHWHGVDQPR-NPWSDGPEFI 107
>02_05_0235 -
27068516-27069032,27069697-27069788,27070056-27070289,
27071569-27071676,27071796-27071855,27072368-27072443,
27072550-27072710,27076919-27076981,27077061-27077148,
27077568-27078308,27078406-27079033,27079314-27079368,
27082073-27083527
Length = 1425
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 390 HHPGSVGHPTSPRSDWAFGPDLG 322
H PG V +PTSP S W G +G
Sbjct: 925 HSPGRVENPTSPGSRWKKGKLVG 947
>05_01_0505 + 4207841-4208455,4209982-4210143,4210247-4210717
Length = 415
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +3
Query: 384 GGVFVTNGKGLVPPLVT--TDFIVDDKGNASAPLHSEFHVHGAWTG 515
GG+ + V PL T T +V GN++A + H WTG
Sbjct: 141 GGIAGAVSRTAVAPLETIRTHLMVGSNGNSTAEVFQSIMKHEGWTG 186
>01_05_0490 + 22672241-22674679
Length = 812
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 408 YHS*QRHHPGSVGHPTSPRSDWAFGPD 328
+H+ HH S GH +SP SD + PD
Sbjct: 565 HHNHHHHHHLSDGHYSSPSSDASASPD 591
>08_02_1017 -
23616244-23616381,23616471-23616537,23617160-23617238,
23617330-23617486,23617581-23617719,23617820-23617872,
23618037-23618120,23618291-23618359,23618488-23618553,
23618657-23618800,23619331-23619414,23619498-23619596,
23620097-23620219,23620745-23621290
Length = 615
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 227 KDNHQATRHIPTSIPSTTAKLPRSAVSTTTENPRSGPNAQSDRGDV 364
+D+ + H + PS+ + RS S+++ PRS + QS DV
Sbjct: 25 RDHLPRSSHFRLARPSSITDVSRSCSSSSSSPPRSLSSKQSGHADV 70
>03_01_0150 +
1191410-1191697,1191818-1191941,1192063-1192121,
1192565-1192629,1192838-1192931,1193005-1193085,
1193176-1193287,1193949-1194036,1194440-1194561,
1194636-1194973,1195579-1195870,1195946-1196016,
1197741-1197849,1198760-1198803,1198804-1198847,
1200431-1200524
Length = 674
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = -1
Query: 457 LSSTMKSVVTSGGTNPLPFVTKTPPRFCWSSNITSIGLGI 338
LSS KS+ G P + T R W+ N S+ G+
Sbjct: 369 LSSLEKSMKDGTGAKPASYDRSTVKRSAWNQNRNSVSRGV 408
>06_01_0541 -
3874476-3874694,3874816-3874868,3875944-3876055,
3876143-3876321,3876358-3877195
Length = 466
Score = 27.1 bits (57), Expect = 8.9
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Frame = -1
Query: 502 PCTWNSECSGALAFPLSSTMKSVVTSGGTN------PLPFVTKTPPRFCWSSNITS 353
P S +GA AFP S+ +S+ + GT+ PLP T + P WSS ++S
Sbjct: 116 PAPPTSRATGADAFPFSALRESLNKNLGTSPTASAVPLPGATASSPD--WSSILSS 169
>06_01_0531 -
3836420-3836638,3836760-3836812,3837888-3837999,
3838087-3838265,3838302-3839139
Length = 466
Score = 27.1 bits (57), Expect = 8.9
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Frame = -1
Query: 502 PCTWNSECSGALAFPLSSTMKSVVTSGGTN------PLPFVTKTPPRFCWSSNITS 353
P S +GA AFP S+ +S+ + GT+ PLP T + P WSS ++S
Sbjct: 116 PAPPTSRATGADAFPFSALRESLNKNLGTSPTASAVPLPGATASSPD--WSSILSS 169
>05_07_0066 +
27453611-27453627,27454729-27454872,27455998-27456690,
27457700-27458111,27458220-27458297,27458938-27458953,
27459038-27459192
Length = 504
Score = 27.1 bits (57), Expect = 8.9
Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = -2
Query: 432 SPAAELILYHS*QRHHPGSVGHPTSPRSDWAFGPDLG--FSVVVDTADL 292
SPA E H HHP + PTSP S G G S V D+A L
Sbjct: 146 SPARERERDHG---HHPSDISDPTSPSSTGVGGGGAGGSGSAVPDSAVL 191
>02_01_0667 - 4958924-4959523
Length = 199
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 466 AFPLSSTMKSVVTSGGTNPLPFVTKTPP 383
A P +S++ S V S GT P P + PP
Sbjct: 100 ARPATSSLSSTVESFGTRPRPVLPPRPP 127
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,550,461
Number of Sequences: 37544
Number of extensions: 360756
Number of successful extensions: 1187
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1186
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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