Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0921X.Seq
         (552 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    27   2.4  
SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces po...    27   2.4  
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C...    27   2.4  
SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp...    26   3.2  
SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...    26   4.2  
SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual     26   4.2  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    26   4.2  
SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        25   5.6  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    25   5.6  
SPBC21B10.13c |||transcription factor, homeobox type |Schizosacc...    25   7.4  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    25   7.4  
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz...    25   9.8  
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch...    25   9.8  
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac...    25   9.8  

>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +1

Query: 250 ESDTSSSRHDWCSHRLQVRPGQFESKSRRMGHPDHQGNAGPPSETRRGN 396
           E+D+S S     +H  +++ G+  S S  + HPD  G+      T++ N
Sbjct: 245 ETDSSVSAPKVANHDEELKQGKSTSPSDTVLHPDLNGSPDTGDATQKPN 293


>SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 289 VSTSHDDLRMYQTPTPAYDSFKASSRATTQGNS 191
           V T+H   R++++PTPA  S    S  +  G +
Sbjct: 69  VHTNHGPERVFESPTPARTSISLESAISPNGTT 101


>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
           Cct2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
 Frame = +2

Query: 257 IHPQVVMTGAHIAYKYAPGNLRARA--GEWDTQTIKEMLDHQVR--LVEEIIIHEDFNTK 424
           IHPQV++ G  IA K A   LRA +     D    +  L++  R  L  +I+     +  
Sbjct: 117 IHPQVIIDGYRIATKTAIDALRASSIDNSSDPAKFRSDLENIARTTLSSKILSQNKNHFA 176

Query: 425 SLKNDVALLRMHAPFNLAEHINMI 496
            L  D A+LR+    NL ++I +I
Sbjct: 177 QLAVD-AVLRLKGSTNL-DNIQII 198


>SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = +1

Query: 394 NNHTRRFQHEKPQERRGAPADARALQPRRAHQHDL-PPGPGDSFDTSKNCVAK 549
           +NH+        QER         +   +A   D+ PPG   SFD SKN + K
Sbjct: 111 DNHSSPPSKNPQQERMKIAWRYEQVSKTKAPTLDMIPPGYTHSFDLSKNLIVK 163


>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 200 GELAELSLRTHPSGDGHSDPHGVPVAASLQLRGVRLRL 87
           G+L+ + +R    G    DPH VPV  S +   V +RL
Sbjct: 131 GKLSIMPIRRGYWGTALGDPHTVPVKVSGKCGSVTVRL 168


>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = -3

Query: 457 HPQERHVVLEAFRVEIFVYDYFLDESHLVVQHFLDGLGVPFSGSCSQIARGVLVSDVST 281
           H Q+R + LE   +E+  +D+ +   H  +  F   L   FS S + IA  V      T
Sbjct: 121 HSQKRILGLERMTLELICFDFRVRHPHNYMVKFAKSL--KFSSSTASIAWNVCTDAYKT 177


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 63  NPITEPVPKPQPDPSKLKGCG 125
           NPI  PVP+P+ D ++ K CG
Sbjct: 579 NPI--PVPRPRVDLTQCKSCG 597


>SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 448 PADARALQPRRAHQHDLPPGPGDSFDTSK 534
           PA+  +++ RR+H  DLP   G    T +
Sbjct: 69  PANVYSIEQRRSHDDDLPTIKGSDASTQQ 97


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
 Frame = +1

Query: 370 PPSETRRGNNHTRRFQHEKPQ------ERRGAPADARALQPRRAHQHDLPPGPGDS 519
           PP  ++R NN   RF +  PQ       RR A    ++  P R     LP  P +S
Sbjct: 57  PPFLSKRSNNSPHRFSYSPPQHPASINSRRVASYTVQS-SPSRTTYRQLPNEPQNS 111


>SPBC21B10.13c |||transcription factor, homeobox type
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 201

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
 Frame = +1

Query: 346 PDHQGNAGPPS-ETRRGNNHTRRFQHEKPQERRGAPADARALQ 471
           P   GN G          NH     H+K + RR   A+A  L+
Sbjct: 7   PSKSGNTGKDLISNNEAKNHEDEETHQKKRRRRTTDAEATLLE 49


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = -3

Query: 400 DYFLDESHLVVQHFLDGL---GVPFSGSCSQIAR 308
           DYFLD S  V+Q  L  +   G+ +S     IAR
Sbjct: 155 DYFLDSSSTVIQRILPAIREHGISWSWLLQLIAR 188


>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
           Mad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +1

Query: 19  SAKKTAKRAWRSAALIP*RNPCQSRSRTPR 108
           S+K T  +A  S A  P R+P QSRS+ PR
Sbjct: 2   SSKLTVYQATTSMADSP-RDPFQSRSQLPR 30


>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 136

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -1

Query: 552 PFGDAVLAGVEAVP 511
           PFG AV+AGVE  P
Sbjct: 37  PFGHAVVAGVERYP 50


>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -1

Query: 552 PFGDAVLAGVEAVP 511
           PFG AV+AGVE  P
Sbjct: 37  PFGHAVVAGVERYP 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,213,777
Number of Sequences: 5004
Number of extensions: 44586
Number of successful extensions: 150
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)