Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0919.Seq
         (658 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0036 + 3217163-3217584,3217752-3218322                           32   0.46 
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420...    29   3.3  
03_05_0941 + 29008322-29009686,29009929-29010012,29010889-290110...    29   4.3  
11_04_0045 + 12731603-12732487,12732572-12732647,12744290-12745371     28   5.7  
01_01_0933 - 7368672-7368785,7368860-7368895,7369581-7369715,736...    28   7.5  
01_01_0857 - 6693460-6693991,6695086-6695165,6695508-6697448           27   9.9  

>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +3

Query: 501 ESYTIHWPSFYNVV-TGKTLALPNLIALQH 587
           ES +  W  F N+V +G TL++PN + LQH
Sbjct: 67  ESISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>04_01_0312 +
           4206400-4206627,4206661-4207269,4207425-4207902,
           4208006-4208297,4209278-4209569,4210013-4210465
          Length = 783

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 498 SESYTIHWPSFYNVV-TGKTLALPNLIALQH 587
           +ES    W  F N+V +G TL+LP  + LQH
Sbjct: 126 NESIGAAWSRFTNLVQSGPTLSLPEYVLLQH 156


>03_05_0941 +
           29008322-29009686,29009929-29010012,29010889-29011052,
           29011208-29011233,29011494-29011583,29012135-29012229,
           29012328-29012495
          Length = 663

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +3

Query: 534 NVVTGKTLALPNLIALQHIPP 596
           N +TG+ +ALP++I ++H+ P
Sbjct: 171 NPITGEQIALPSVITIEHVNP 191


>11_04_0045 + 12731603-12732487,12732572-12732647,12744290-12745371
          Length = 680

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 501 ESYTIHWPSFYNVV-TGKTLALPNLIALQH 587
           ES    W  F N+V +G TL+LP  + LQH
Sbjct: 408 ESIGAAWSRFTNLVQSGLTLSLPEYVLLQH 437


>01_01_0933 -
           7368672-7368785,7368860-7368895,7369581-7369715,
           7369825-7369989,7370060-7370140,7370316-7370391,
           7370479-7370612,7370706-7370798,7371860-7372188,
           7372290-7372350,7372407-7372778
          Length = 531

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 173 WRSCWQPRPQNWLSIRKTMLTGETVVMEGQESTG 274
           WR+ W+ RP  W S+    L  E  V +G    G
Sbjct: 46  WRTGWRGRPMRWASLVVMKLCVEAGVNKGHHLLG 79


>01_01_0857 - 6693460-6693991,6695086-6695165,6695508-6697448
          Length = 850

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +3

Query: 474 GPVPNSPYSESYTIHWPSFYNVVTGKTLALPNLIALQHIPPFRQLA 611
           GP+P +P   S+ +H  +  ++   + LALP   A + +PP   +A
Sbjct: 78  GPLPAAPAPLSFHLHGETLASLAPLRRLALP-ACAHRRVPPSSSIA 122


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,773,798
Number of Sequences: 37544
Number of extensions: 400619
Number of successful extensions: 1180
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1179
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)