Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0919.Seq
         (658 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80033-3|AAC48199.1| 1847|Caenorhabditis elegans Nuclear pore co...    29   2.9  
AF038618-11|AAM98016.1|  419|Caenorhabditis elegans P38 map kina...    29   2.9  
U41036-2|AAA82385.2| 1086|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AF100663-2|AAC68981.2|  532|Caenorhabditis elegans Udp-glucurono...    27   8.9  
AF022967-9|AAB69881.2|  205|Caenorhabditis elegans Hypothetical ...    27   8.9  

>U80033-3|AAC48199.1| 1847|Caenorhabditis elegans Nuclear pore complex
            protein protein12 protein.
          Length = 1847

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 369  NTGKNLSVLPPISHRDVTSL*PIVRATPLKGSPVDSCPS 253
            NT    S+   +S  +V+   P+ R+TP+ GSP  S P+
Sbjct: 1789 NTTHQTSMASSLSSTNVSLREPVFRSTPIAGSPQVSLPT 1827


>AF038618-11|AAM98016.1|  419|Caenorhabditis elegans P38 map kinase
           family protein 2,isoform a protein.
          Length = 419

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +1

Query: 13  ILSLAFLSGLIYLVETIVIIHKPINGSTLIQTKSNDVSIFYIFRQLSFI 159
           +L    L GL Y + +  IIH+ +  S +   +  +V +F  F QLSF+
Sbjct: 154 LLIYQVLRGLKY-IHSAGIIHRDLKPSNIAVNERCEVKVFLSFSQLSFL 201


>U41036-2|AAA82385.2| 1086|Caenorhabditis elegans Hypothetical protein
            T14E8.1a protein.
          Length = 1086

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = +2

Query: 179  SCWQPRPQN--WLSIRKTMLTGETVVMEGQESTGLPFNGVARTIGYREVTSRWLMGGKTD 352
            +CW+  P      S   T++      MEG + + L         GY  V+SR+L   + D
Sbjct: 974  ACWKANPAERPQFSDLVTIIPNVVKYMEGYDRSQLQ-------AGYERVSSRFLSLSRHD 1026

Query: 353  KFFPVFSN 376
              FP++ N
Sbjct: 1027 PAFPIYQN 1034


>AF100663-2|AAC68981.2|  532|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein19 protein.
          Length = 532

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = -3

Query: 215 CSTSFAGAVASKSASEVKQIKLSWRKI*KIETSFDFVWISVLPLI 81
           C + F   +  + A  VK+I   WR   ++     F+  + +PL+
Sbjct: 213 CGSYFFSYIGDREAEVVKEINPKWRSWREVVPEASFIMTNQIPLL 257


>AF022967-9|AAB69881.2|  205|Caenorhabditis elegans Hypothetical
           protein C13A2.11 protein.
          Length = 205

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 506 VYNSLAVVLQRRDWENPGVTQLNRLAAHPPFS-PAGVIAKRP 628
           +YNS+ +   +RDW+   + Q NRL + P    P+ +  +RP
Sbjct: 28  LYNSMGIYGSKRDWKL--IKQTNRLTSSPLIKIPSIIHVQRP 67


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,585,786
Number of Sequences: 27780
Number of extensions: 330825
Number of successful extensions: 857
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)