Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0917.Seq
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyc...    31   0.21 
SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces pombe...    28   1.5  
SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy...    27   1.9  
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom...    26   5.9  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   7.8  
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    25   7.8  

>SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 313

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -2

Query: 409 LLPKGFRTRISSDGRQYYDNLINGLLDRGIEPMVTLYHSDMPKIFQDL 266
           L P   RT+I      +YD + NG+   G       Y  ++  +FQ L
Sbjct: 159 LYPSSLRTKIDELNDYFYDTVNNGVYKTGFATTAEAYEKNVRVVFQGL 206


>SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 588 NVSDKTPSTWDDYTHTQPHRIKDHSN 511
           NV +  P T +    TQ H+ +DHSN
Sbjct: 3   NVQEHDPDTQEHNNETQNHKQEDHSN 28


>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 278

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 165 IDRDPKFHSVSVQRESY 215
           +++DPKF    VQRESY
Sbjct: 117 LEQDPKFQEFKVQRESY 133


>SPAC22A12.11 |dak1||dihydroxyacetone kinase
           Dak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 123 GRRAIPGSIFVHENSAACSRQSLP 52
           GRR + G++ VH+ + A + + LP
Sbjct: 147 GRRGLSGTVLVHKIAGAAAARGLP 170


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 597  GSWNVSDKTPSTWDDYTHTQPH 532
            G  N++D  P+TW +Y H   H
Sbjct: 1694 GELNIND--PNTWKEYVHLDDH 1713


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 368 SVRTDASAESFRQQSWPGYRKPVKIKSQ 451
           S ++    E+F +Q    Y  P+K+KSQ
Sbjct: 493 SEKSSDDEEAFEKQVTSSYSSPIKVKSQ 520


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,075,087
Number of Sequences: 5004
Number of extensions: 65005
Number of successful extensions: 165
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)