Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0917.Seq
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41557-9|AAA83309.1|  479|Caenorhabditis elegans Hypothetical pr...    82   3e-16
AF099915-3|AAC68766.1|  475|Caenorhabditis elegans Hypothetical ...    79   4e-15
AL032626-2|CAA21539.1|  571|Caenorhabditis elegans Hypothetical ...    29   3.2  

>U41557-9|AAA83309.1|  479|Caenorhabditis elegans Hypothetical
           protein C50F7.10 protein.
          Length = 479

 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 36/82 (43%), Positives = 54/82 (65%)
 Frame = -2

Query: 508 DVACDSYNQYEKDIEMAEQLGLDFYRFSISWPRLLPKGFRTRISSDGRQYYDNLINGLLD 329
           D++C+   +Y++D+ +  ++G+  YRFSISW R+LP G    I+ DG Q+Y ++   L D
Sbjct: 53  DLSCEGRLKYKEDVALLSKIGVTSYRFSISWSRILPDGTLKTINEDGIQFYRDICLLLRD 112

Query: 328 RGIEPMVTLYHSDMPKIFQDLG 263
            GIEP+VTL+H DMP    D G
Sbjct: 113 NGIEPIVTLFHFDMPLSIYDNG 134



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 19/46 (41%), Positives = 30/46 (65%)
 Frame = -3

Query: 648 FPRWFKFGAATSSYQIEGSWNVSDKTPSTWDDYTHTQPHRIKDHSN 511
           FP+ F+   AT++YQIEG+ N+  +  STWD    ++  RI D+S+
Sbjct: 7   FPKNFQLATATAAYQIEGAKNLDGRGFSTWDS-IRSENGRIHDNSD 51



 Score = 38.3 bits (85), Expect = 0.005
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = -1

Query: 254 NPEMAEWFADYADVAFSLYGDRVKLWITINE 162
           N E  E F  +AD+ F  +GD VK WIT NE
Sbjct: 139 NKENCEHFEKFADLCFQKFGDLVKTWITFNE 169


>AF099915-3|AAC68766.1|  475|Caenorhabditis elegans Hypothetical
           protein E02H9.5 protein.
          Length = 475

 Score = 78.6 bits (185), Expect = 4e-15
 Identities = 34/82 (41%), Positives = 54/82 (65%)
 Frame = -2

Query: 508 DVACDSYNQYEKDIEMAEQLGLDFYRFSISWPRLLPKGFRTRISSDGRQYYDNLINGLLD 329
           D++CD   +Y++D+ +  ++G+  YRFSISW R+LP G  + I+ +G ++Y +L   L +
Sbjct: 53  DLSCDGLLKYKEDVALLAEIGVTNYRFSISWSRILPDGTLSTINEEGIKFYRDLCLLLKE 112

Query: 328 RGIEPMVTLYHSDMPKIFQDLG 263
             IEP+VTL+H DMP    D G
Sbjct: 113 NNIEPVVTLFHFDMPLAIYDNG 134



 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 20/46 (43%), Positives = 31/46 (67%)
 Frame = -3

Query: 648 FPRWFKFGAATSSYQIEGSWNVSDKTPSTWDDYTHTQPHRIKDHSN 511
           FP+ FK   AT++YQIEG+ +++ +  STW D    +P RI D+S+
Sbjct: 7   FPKNFKLATATAAYQIEGAKDLNGRGFSTW-DAIRLEPGRILDNSD 51



 Score = 37.5 bits (83), Expect = 0.009
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = -1

Query: 254 NPEMAEWFADYADVAFSLYGDRVKLWITINE 162
           N E  E F  +AD+ F  +GD VK WIT NE
Sbjct: 139 NRENCEHFEKFADLCFQKFGDLVKTWITYNE 169


>AL032626-2|CAA21539.1|  571|Caenorhabditis elegans Hypothetical
           protein Y37D8A.2 protein.
          Length = 571

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 371 VRTDASAESFRQQSWPGYRKP 433
           V +D +A  FR+  WPGY +P
Sbjct: 368 VHSDKTAHLFRETYWPGYNQP 388


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,944,098
Number of Sequences: 27780
Number of extensions: 367482
Number of successful extensions: 916
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)