Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0915X.Seq
(423 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 42 5e-05
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 32 0.032
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 0.91
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 0.91
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 27 1.6
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 25 3.7
SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 25 4.8
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 25 6.4
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 25 6.4
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 25 6.4
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 41.5 bits (93), Expect = 5e-05
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +1
Query: 106 SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDS-GFNRQREKCFKCNRTG 255
S P + CYKC R GH AR+C G S G +R C+ C G
Sbjct: 75 SSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYG 125
Score = 39.1 bits (87), Expect = 3e-04
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 15/64 (23%)
Frame = +1
Query: 130 SVCYKCNRTGHFARECTQ------------GGVVSRD---SGFNRQREKCFKCNRTGTLR 264
S+CY CN+TGH A ECT+ G + RD S RQ +C+KC R G +
Sbjct: 36 SICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIA 95
Query: 265 GTAR 276
R
Sbjct: 96 RDCR 99
Score = 35.5 bits (78), Expect = 0.003
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +1
Query: 136 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTG 255
CY C GH ARECT+G + C+ CN+TG
Sbjct: 19 CYNCGENGHQARECTKGSI-------------CYNCNQTG 45
Score = 35.5 bits (78), Expect = 0.003
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Frame = +2
Query: 311 GHIARDFAQIPDEKS---CYNCNKTGHIARKC 397
GH+ RD P+ + CY C + GHIAR C
Sbjct: 67 GHLVRDCPSSPNPRQGAECYKCGRVGHIARDC 98
Score = 34.3 bits (75), Expect = 0.008
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +2
Query: 308 HGHIARDFAQIPDEKSCYNCNKTGHIARKCSDGRRLST 421
+GH AR+ + CYNCN+TGH A +C++ ++ T
Sbjct: 25 NGHQARECTK---GSICYNCNQTGHKASECTEPQQEKT 59
Score = 33.9 bits (74), Expect = 0.010
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 311 GHIARDFAQIPDEKSCYNCNKTGHIARKC 397
GH A + + EK+CY C GH+ R C
Sbjct: 45 GHKASECTEPQQEKTCYACGTAGHLVRDC 73
Score = 33.9 bits (74), Expect = 0.010
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 311 GHIARDFAQIPDEKSCYNCNKTGHIARKCS 400
GH + + Q D + CY CN+ GHIA C+
Sbjct: 144 GHRSFECQQASDGQLCYKCNQPGHIAVNCT 173
Score = 32.7 bits (71), Expect = 0.024
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 10/54 (18%)
Frame = +1
Query: 124 SSSVCYKCNRTGHFARECTQG------GVVSRDSGFNRQR----EKCFKCNRTG 255
S+ CY C GH AR+CT G G + S F Q+ + C+KCN+ G
Sbjct: 114 SNMNCYACGSYGHQARDCTMGVKCYSCGKIGHRS-FECQQASDGQLCYKCNQPG 166
Score = 31.9 bits (69), Expect = 0.042
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 118 AMSSSVCYKCNRTGHFARECT 180
A +CYKCN+ GH A CT
Sbjct: 153 ASDGQLCYKCNQPGHIAVNCT 173
Score = 31.5 bits (68), Expect = 0.056
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 356 CYNCNKTGHIARKCSDG 406
CYNC + GH AR+C+ G
Sbjct: 19 CYNCGENGHQARECTKG 35
Score = 27.5 bits (58), Expect = 0.91
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = +2
Query: 308 HGHIARDFAQIPDEKSCYNCNKTGHIARKC---SDGR 409
+GH ARD CY+C K GH + +C SDG+
Sbjct: 124 YGHQARDCTM---GVKCYSCGKIGHRSFECQQASDGQ 157
Score = 26.6 bits (56), Expect = 1.6
Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 11/45 (24%)
Frame = +2
Query: 305 RHGHIARD-----------FAQIPDEKSCYNCNKTGHIARKCSDG 406
R GHIARD F +CY C GH AR C+ G
Sbjct: 90 RVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMG 134
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 32.3 bits (70), Expect = 0.032
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 341 PDEKSCYNCNKTGHIARKCSDGRR 412
P K C NC GHIA +CS+ R+
Sbjct: 122 PWTKKCMNCGLLGHIAARCSEPRK 145
Score = 27.1 bits (57), Expect = 1.2
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +2
Query: 323 RDFAQIPDEKS-CYNCNKTGHIARKC 397
R F P E C+NC GHI++ C
Sbjct: 77 RYFGSDPSESIVCHNCKGNGHISKDC 102
Score = 25.4 bits (53), Expect = 3.7
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
Frame = +1
Query: 127 SSVCYKCNRTGHFAREC------TQGGVVSRDSGFNRQREKCFKCNRTG 255
S VC+ C GH +++C T G + S +KC C G
Sbjct: 86 SIVCHNCKGNGHISKDCPHVLCTTCGAIDDHISVRCPWTKKCMNCGLLG 134
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.5 bits (58), Expect = 0.91
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1
Query: 130 SVCYKCNRTGHFAREC 177
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.5 bits (58), Expect = 0.91
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1
Query: 130 SVCYKCNRTGHFAREC 177
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 26.6 bits (56), Expect = 1.6
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 130 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGTLRG 267
S+C++C H C++ G + + KCF C+ G L G
Sbjct: 100 SICFRCGSKEHSLNACSKKGPL--------KFAKCFICHENGHLSG 137
Score = 25.8 bits (54), Expect = 2.8
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +2
Query: 347 EKSCYNCNKTGHIARKCSDGR 409
+K C+ C + GHI + C + +
Sbjct: 76 DKFCFACRQQGHIVQDCPEAK 96
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 25.4 bits (53), Expect = 3.7
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = +1
Query: 133 VCYKCNRTGHFAREC 177
+CY+C + GH+ + C
Sbjct: 184 ICYRCGQKGHWIQAC 198
>SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 624
Score = 25.0 bits (52), Expect = 4.8
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -2
Query: 416 TTASRRNTSVRCGPSCCSCNMTSRPGSVRNRALCARAVTSVATVSLFL 273
TT + + P+ S + TS SVR + + S+ TVSL L
Sbjct: 577 TTVNNPSAVSNYAPTVLSASTTSGTSSVRAKPIVFYLFASLLTVSLLL 624
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 24.6 bits (51), Expect = 6.4
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 75 LH*CLKCSRIFKTDRN 122
LH C+ C IF DRN
Sbjct: 425 LHWCINCRSIFSGDRN 440
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 24.6 bits (51), Expect = 6.4
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -3
Query: 175 IRARNARSGCTCSKRLNSLRSVLKILEHLRH*CNDRSTINYPMNLQI 35
+R+R S KR + L+ V LEHL+H + ++N + ++I
Sbjct: 411 LRSRVDISESKLKKRDDKLKRVSSQLEHLKHNYEEEKSMNENLLVRI 457
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 24.6 bits (51), Expect = 6.4
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +1
Query: 133 VCYKCNRTGHFAREC 177
VC C GH AR+C
Sbjct: 335 VCRHCGSIGHIARDC 349
Score = 24.6 bits (51), Expect = 6.4
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +2
Query: 356 CYNCNKTGHIARKC 397
C +C GHIAR C
Sbjct: 336 CRHCGSIGHIARDC 349
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,616,382
Number of Sequences: 5004
Number of extensions: 29456
Number of successful extensions: 105
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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