Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0915X.Seq
(423 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK054592-1|BAB70769.1| 167|Homo sapiens protein ( Homo sapiens ... 52 8e-07
BC014911-1|AAH14911.1| 170|Homo sapiens CNBP protein protein. 46 7e-05
BC000288-1|AAH00288.1| 170|Homo sapiens CNBP protein protein. 46 7e-05
DQ092367-1|AAY96755.1| 172|Homo sapiens cellular nucleic acid b... 44 2e-04
DQ092366-1|AAY96754.1| 171|Homo sapiens cellular nucleic acid b... 44 2e-04
DQ091187-1|AAY89856.1| 178|Homo sapiens cellular nucleic acid b... 42 9e-04
BT019613-1|AAV38419.1| 178|Homo sapiens zinc finger protein 9 (... 42 9e-04
U19765-1|AAA91782.1| 177|Homo sapiens nucleic acid binding prot... 41 0.001
M28372-1|AAA61975.1| 177|Homo sapiens SRE-binding protein protein. 41 0.001
BC093058-1|AAH93058.1| 177|Homo sapiens CCHC-type zinc finger, ... 41 0.001
AY329622-1|AAR89462.1| 177|Homo sapiens zinc finger protein 9 p... 41 0.001
BC021176-1|AAH21176.1| 166|Homo sapiens zinc finger, CCHC domai... 37 0.024
U79569-1|AAD00321.1| 269|Homo sapiens no arches protein. 36 0.074
EF191081-1|ABN05292.1| 269|Homo sapiens cleavage and polyadenyl... 36 0.074
CR542161-1|CAG46958.1| 269|Homo sapiens CPSF4 protein. 36 0.074
BC050738-1|AAH50738.1| 243|Homo sapiens CPSF4 protein protein. 34 0.23
BC003101-1|AAH03101.1| 244|Homo sapiens cleavage and polyadenyl... 34 0.23
AY436367-1|AAR11855.1| 54|Homo sapiens cellular nucleic acid b... 34 0.23
AL832323-1|CAD38618.1| 899|Homo sapiens hypothetical protein pr... 33 0.52
AK000288-1|BAA91057.1| 298|Homo sapiens protein ( Homo sapiens ... 33 0.52
AB051531-1|BAB21835.1| 855|Homo sapiens KIAA1744 protein protein. 33 0.52
Z95624-1|CAB09136.1| 278|Homo sapiens novel protein protein. 32 0.92
U05227-1|AAA17031.1| 278|Homo sapiens Rar protein protein. 32 0.92
BC101172-1|AAI01173.1| 278|Homo sapiens Ras-like GTPase-like pr... 32 0.92
BC101171-1|AAI01172.1| 278|Homo sapiens Ras-like GTPase-like pr... 32 0.92
BC101170-1|AAI01171.1| 278|Homo sapiens Ras-like GTPase-like pr... 32 0.92
BC101169-1|AAI01170.1| 278|Homo sapiens Ras-like GTPase-like pr... 32 0.92
BC018039-1|AAH18039.1| 278|Homo sapiens RAB40B, member RAS onco... 32 0.92
AF480924-1|AAM81186.1| 622|Homo sapiens gag protein protein. 32 0.92
AB209711-1|BAD92948.1| 380|Homo sapiens RAB40B, member RAS onco... 32 0.92
Z98883-3|CAM26443.1| 281|Homo sapiens RAB40C, member RAS oncoge... 31 1.6
Z84479-1|CAB06484.2| 281|Homo sapiens RAB40C, member RAS oncoge... 31 1.6
BC028696-1|AAH28696.1| 281|Homo sapiens RAB40C, member RAS onco... 31 1.6
AY823398-1|AAV83924.1| 262|Homo sapiens RAR-like GTPase variant... 31 1.6
AE006464-4|AAK61236.1| 281|Homo sapiens RAR (RAS like GTPase) l... 31 1.6
Z69733-1|CAI41993.1| 277|Homo sapiens RAB40A, member RAS oncoge... 30 2.8
BC117232-1|AAI17233.1| 277|Homo sapiens RAB40A, member RAS onco... 30 2.8
BC113501-1|AAI13502.1| 277|Homo sapiens RAB40A, member RAS onco... 30 2.8
BC074855-1|AAH74855.1| 277|Homo sapiens RAB40A, member RAS onco... 30 2.8
BC074854-1|AAH74854.1| 277|Homo sapiens RAB40A, member RAS onco... 30 2.8
AK091495-1|BAC03676.1| 212|Homo sapiens protein ( Homo sapiens ... 30 2.8
AF132748-1|AAL75949.1| 277|Homo sapiens Rar-2 protein protein. 30 2.8
AB232637-1|BAF02899.1| 277|Homo sapiens Rab40A protein. 30 2.8
AF422143-1|AAL60514.1| 278|Homo sapiens SOCS box containing pro... 30 3.7
D83776-1|BAA12105.1| 1516|Homo sapiens KIAA0191 protein. 29 4.9
BC131734-1|AAI31735.1| 1645|Homo sapiens zinc finger, CCHC domai... 29 4.9
BC101478-1|AAI01479.1| 949|Homo sapiens zinc finger, CCHC domai... 29 4.9
BC051694-1|AAH51694.1| 677|Homo sapiens similar to KIAA1680 pro... 29 4.9
AL138849-1|CAI23476.1| 1644|Homo sapiens zinc finger, CCHC domai... 29 4.9
AL117532-1|CAB55981.1| 845|Homo sapiens hypothetical protein pr... 29 4.9
AB051467-1|BAB21771.1| 902|Homo sapiens KIAA1680 protein protein. 29 4.9
AB030243-1|BAB83129.1| 949|Homo sapiens BDG-29 protein. 29 4.9
AB011151-1|BAA25505.2| 910|Homo sapiens KIAA0579 protein protein. 29 4.9
U89505-1|AAC51293.1| 366|Homo sapiens Hlark protein. 29 6.5
BC063524-1|AAH63524.1| 919|Homo sapiens RBBP6 protein protein. 29 6.5
BC032735-1|AAH32735.1| 364|Homo sapiens RNA binding motif prote... 29 6.5
BC000307-1|AAH00307.1| 364|Homo sapiens RNA binding motif prote... 29 6.5
AY072922-1|AAL68925.1| 1625|Homo sapiens p53-associated cellular... 29 6.5
AB112075-1|BAC77637.1| 1758|Homo sapiens retinoblastoma binding ... 29 6.5
AB112074-1|BAC77636.1| 1792|Homo sapiens retinoblastoma binding ... 29 6.5
BC004951-1|AAH04951.1| 359|Homo sapiens RNA binding motif prote... 29 8.5
BC003503-1|AAH03503.1| 359|Homo sapiens RNA binding motif prote... 29 8.5
AJ312399-1|CAC42883.1| 655|Homo sapiens leishmanolysin-like pep... 29 8.5
AF307451-1|AAK30049.1| 578|Homo sapiens Cat eye syndrome critic... 29 8.5
>AK054592-1|BAB70769.1| 167|Homo sapiens protein ( Homo sapiens
cDNA FLJ30030 fis, clone 3NB692001339, highly similar to
CELLULAR NUCLEIC ACID BINDING PROTEIN. ).
Length = 167
Score = 52.0 bits (119), Expect = 8e-07
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Frame = +1
Query: 121 MSSSVCYKCNRTGHFARECTQGGVVSRD------SGFNRQREKCFKCNRTGTLRGTARNR 282
MSS+ C+KC R+GH+AREC GG R GF R+ C++C +G L +
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRDICYRCGESGHLAKDCDLQ 60
Query: 283 LTVATDVTARAHSARFRTDPGRE 351
+ H A+ +P RE
Sbjct: 61 EDACYNCGRGGHIAKDCKEPKRE 83
Score = 39.5 bits (88), Expect = 0.005
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +2
Query: 305 RHGHIARDFAQIPDEKS--CYNCNKTGHIARKC 397
R GHIA+D + E+ CYNC K GH+AR C
Sbjct: 69 RGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 101
Score = 37.9 bits (84), Expect = 0.014
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2
Query: 311 GHIARDFAQIPDEKSCYNCNKTGHIARKCSDGRR 412
GH+A+D E +CYNC + GHIA+ C + +R
Sbjct: 51 GHLAKDCDL--QEDACYNCGRGGHIAKDCKEPKR 82
Score = 36.7 bits (81), Expect = 0.032
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +2
Query: 311 GHIARDFAQIPDEKSCYNCNKTGHIARKCS 400
GH+ARD DE+ CY+C + GHI + C+
Sbjct: 95 GHLARD-CDHADEQKCYSCGEFGHIQKDCT 123
Score = 33.9 bits (74), Expect = 0.23
Identities = 12/30 (40%), Positives = 22/30 (73%)
Frame = +2
Query: 311 GHIARDFAQIPDEKSCYNCNKTGHIARKCS 400
GH+A + ++ E +CY C ++GH+AR+C+
Sbjct: 134 GHVAINCSKT-SEVNCYRCGESGHLARECT 162
Score = 33.1 bits (72), Expect = 0.40
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +1
Query: 106 SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREK-CFKCNRTGTL 261
+K + CY C R GH A++C + R+RE+ C+ C + G L
Sbjct: 54 AKDCDLQEDACYNCGRGGHIAKDCKEP---------KREREQCCYNCGKPGHL 97
Score = 33.1 bits (72), Expect = 0.40
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 311 GHIARDFAQIPDEKSCYNCNKTGHIARKCS 400
GHI +D ++ CY C +TGH+A CS
Sbjct: 116 GHIQKDCTKV----KCYRCGETGHVAINCS 141
Score = 32.3 bits (70), Expect = 0.69
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 136 CYKCNRTGHFARECT 180
CY+C +GH ARECT
Sbjct: 148 CYRCGESGHLARECT 162
Score = 31.9 bits (69), Expect = 0.92
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Frame = +1
Query: 94 AQEFSKPIAMSSSVCYKCNRTGHFAREC----TQGGVVSRDSGFNRQ---REKCFKCNRT 252
A++ +P CY C + GH AR+C Q + G ++ + KC++C T
Sbjct: 74 AKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYRCGET 133
Query: 253 G 255
G
Sbjct: 134 G 134
>BC014911-1|AAH14911.1| 170|Homo sapiens CNBP protein protein.
Length = 170
Score = 45.6 bits (103), Expect = 7e-05
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Frame = +1
Query: 121 MSSSVCYKCNRTGHFARECTQG-----GVVSRDSGF----NRQREKCFKCNRTGTLRGTA 273
MSS+ C+KC R+GH+AREC G G+ SR GF + + C++C +G L
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDC 60
Query: 274 RNRLTVATDVTARAHSARFRTDPGRE 351
+ + H A+ +P RE
Sbjct: 61 DLQEDACYNCGRGGHIAKDCKEPKRE 86
Score = 39.5 bits (88), Expect = 0.005
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +2
Query: 305 RHGHIARDFAQIPDEKS--CYNCNKTGHIARKC 397
R GHIA+D + E+ CYNC K GH+AR C
Sbjct: 72 RGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 104
Score = 37.9 bits (84), Expect = 0.014
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2
Query: 311 GHIARDFAQIPDEKSCYNCNKTGHIARKCSDGRR 412
GH+A+D E +CYNC + GHIA+ C + +R
Sbjct: 54 GHLAKDCDL--QEDACYNCGRGGHIAKDCKEPKR 85
Score = 36.7 bits (81), Expect = 0.032
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +2
Query: 311 GHIARDFAQIPDEKSCYNCNKTGHIARKCS 400
GH+ARD DE+ CY+C + GHI + C+
Sbjct: 98 GHLARD-CDHADEQKCYSCGEFGHIQKDCT 126
Score = 33.9 bits (74), Expect = 0.23
Identities = 12/30 (40%), Positives = 22/30 (73%)
Frame = +2
Query: 311 GHIARDFAQIPDEKSCYNCNKTGHIARKCS 400
GH+A + ++ E +CY C ++GH+AR+C+
Sbjct: 137 GHVAINCSKT-SEVNCYRCGESGHLARECT 165
Score = 33.1 bits (72), Expect = 0.40
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +1
Query: 106 SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREK-CFKCNRTGTL 261
+K + CY C R GH A++C + R+RE+ C+ C + G L
Sbjct: 57 AKDCDLQEDACYNCGRGGHIAKDCKEP---------KREREQCCYNCGKPGHL 100
Score = 33.1 bits (72), Expect = 0.40
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 311 GHIARDFAQIPDEKSCYNCNKTGHIARKCS 400
GHI +D ++ CY C +TGH+A CS
Sbjct: 119 GHIQKDCTKV----KCYRCGETGHVAINCS 144
Score = 32.3 bits (70), Expect = 0.69
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 136 CYKCNRTGHFARECT 180
CY+C +GH ARECT
Sbjct: 151 CYRCGESGHLARECT 165
Score = 31.9 bits (69), Expect = 0.92
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Frame = +1
Query: 94 AQEFSKPIAMSSSVCYKCNRTGHFAREC----TQGGVVSRDSGFNRQ---REKCFKCNRT 252
A++ +P CY C + GH AR+C Q + G ++ + KC++C T
Sbjct: 77 AKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYRCGET 136
Query: 253 G 255
G
Sbjct: 137 G 137
>BC000288-1|AAH00288.1| 170|Homo sapiens CNBP protein protein.
Length = 170
Score = 45.6 bits (103), Expect = 7e-05
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Frame = +1
Query: 121 MSSSVCYKCNRTGHFARECTQG-----GVVSRDSGF----NRQREKCFKCNRTGTLRGTA 273
MSS+ C+KC R+GH+AREC G G+ SR GF + + C++C +G L
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDC 60
Query: 274 RNRLTVATDVTARAHSARFRTDPGRE 351
+ + H A+ +P RE
Sbjct: 61 DLQEDACYNCGRGGHIAKDCKEPKRE 86
Score = 39.5 bits (88), Expect = 0.005
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +2
Query: 305 RHGHIARDFAQIPDEKS--CYNCNKTGHIARKC 397
R GHIA+D + E+ CYNC K GH+AR C
Sbjct: 72 RGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 104
Score = 37.9 bits (84), Expect = 0.014
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2
Query: 311 GHIARDFAQIPDEKSCYNCNKTGHIARKCSDGRR 412
GH+A+D E +CYNC + GHIA+ C + +R
Sbjct: 54 GHLAKDCDL--QEDACYNCGRGGHIAKDCKEPKR 85
Score = 36.7 bits (81), Expect = 0.032
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +2
Query: 311 GHIARDFAQIPDEKSCYNCNKTGHIARKCS 400
GH+ARD DE+ CY+C + GHI + C+
Sbjct: 98 GHLARD-CDHADEQKCYSCGEFGHIQKDCT 126
Score = 33.9 bits (74), Expect = 0.23
Identities = 12/30 (40%), Positives = 22/30 (73%)
Frame = +2
Query: 311 GHIARDFAQIPDEKSCYNCNKTGHIARKCS 400
GH+A + ++ E +CY C ++GH+AR+C+
Sbjct: 137 GHVAINCSKT-SEVNCYRCGESGHLARECT 165
Score = 33.1 bits (72), Expect = 0.40
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +1
Query: 106 SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREK-CFKCNRTGTL 261
+K + CY C R GH A++C + R+RE+ C+ C + G L
Sbjct: 57 AKDCDLQEDACYNCGRGGHIAKDCKEP---------KREREQCCYNCGKPGHL 100
Score = 33.1 bits (72), Expect = 0.40
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 311 GHIARDFAQIPDEKSCYNCNKTGHIARKCS 400
GHI +D ++ CY C +TGH+A CS
Sbjct: 119 GHIQKDCTKV----KCYRCGETGHVAINCS 144
Score = 32.3 bits (70), Expect = 0.69
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 136 CYKCNRTGHFARECT 180
CY+C +GH ARECT
Sbjct: 151 CYRCGESGHLARECT 165
Score = 31.9 bits (69), Expect = 0.92
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Frame = +1
Query: 94 AQEFSKPIAMSSSVCYKCNRTGHFAREC----TQGGVVSRDSGFNRQ---REKCFKCNRT 252
A++ +P CY C + GH AR+C Q + G ++ + KC++C T
Sbjct: 77 AKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYRCGET 136
Query: 253 G 255
G
Sbjct: 137 G 137
>DQ092367-1|AAY96755.1| 172|Homo sapiens cellular nucleic acid
binding protein beta variant 2 protein.
Length = 172
Score = 44.4 bits (100), Expect = 2e-04
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 9/56 (16%)
Frame = +1
Query: 121 MSSSVCYKCNRTGHFARECTQG-----GVVSRDSGF----NRQREKCFKCNRTGTL 261
MSS+ C+KC R+GH+AREC G G+ SR GF + + C++C +G L
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHL 56
Score = 41.9 bits (94), Expect = 9e-04
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +2
Query: 311 GHIARDFAQIPDEKSCYNCNKTGHIARKCSDGRR 412
GH+A+D D ++CYNC + GHIA+ C + +R
Sbjct: 54 GHLAKDCDLQEDVEACYNCGRGGHIAKDCKEPKR 87
Score = 40.3 bits (90), Expect = 0.003
Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Frame = +2
Query: 149 TGPGISRANARRGAWCRGIPVSIGNV--RSASSATAQALCEGLQGTG*PLLQM*RHGHIA 322
TG G R RG + + S+ ++ R S C+ LQ R GHIA
Sbjct: 21 TGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDCD-LQEDVEACYNCGRGGHIA 79
Query: 323 RDFAQIPDEKS--CYNCNKTGHIARKC 397
+D + E+ CYNC K GH+AR C
Sbjct: 80 KDCKEPKREREQCCYNCGKPGHLARDC 106
Score = 36.7 bits (81), Expect = 0.032
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +2
Query: 311 GHIARDFAQIPDEKSCYNCNKTGHIARKCS 400
GH+ARD DE+ CY+C + GHI + C+
Sbjct: 100 GHLARD-CDHADEQKCYSCGEFGHIQKDCT 128
Score = 33.9 bits (74), Expect = 0.23
Identities = 12/30 (40%), Positives = 22/30 (73%)
Frame = +2
Query: 311 GHIARDFAQIPDEKSCYNCNKTGHIARKCS 400
GH+A + ++ E +CY C ++GH+AR+C+
Sbjct: 139 GHVAINCSKT-SEVNCYRCGESGHLARECT 167
Score = 33.1 bits (72), Expect = 0.40
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 311 GHIARDFAQIPDEKSCYNCNKTGHIARKCS 400
GHI +D ++ CY C +TGH+A CS
Sbjct: 121 GHIQKDCTKV----KCYRCGETGHVAINCS 146
Score = 32.3 bits (70), Expect = 0.69
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 14/57 (24%)
Frame = +1
Query: 133 VCYKCNRTGHFARECT------------QGGVVSRD-SGFNRQREK-CFKCNRTGTL 261
+CY+C +GH A++C +GG +++D R+RE+ C+ C + G L
Sbjct: 46 ICYRCGESGHLAKDCDLQEDVEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHL 102
Score = 32.3 bits (70), Expect = 0.69
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 136 CYKCNRTGHFARECT 180
CY+C +GH ARECT
Sbjct: 153 CYRCGESGHLARECT 167
Score = 31.9 bits (69), Expect = 0.92
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Frame = +1
Query: 94 AQEFSKPIAMSSSVCYKCNRTGHFAREC----TQGGVVSRDSGFNRQ---REKCFKCNRT 252
A++ +P CY C + GH AR+C Q + G ++ + KC++C T
Sbjct: 79 AKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYRCGET 138
Query: 253 G 255
G
Sbjct: 139 G 139
>DQ092366-1|AAY96754.1| 171|Homo sapiens cellular nucleic acid
binding protein beta variant 1 protein.
Length = 171
Score = 44.4 bits (100), Expect = 2e-04
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 9/56 (16%)
Frame = +1
Query: 121 MSSSVCYKCNRTGHFARECTQG-----GVVSRDSGF----NRQREKCFKCNRTGTL 261
MSS+ C+KC R+GH+AREC G G+ SR GF + + C++C +G L
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHL 56
Score = 41.9 bits (94), Expect = 9e-04
Identities = 14/34 (41%), Positives = 25/34 (73%)
Frame = +2
Query: 311 GHIARDFAQIPDEKSCYNCNKTGHIARKCSDGRR 412
GH+A+D + ++++CYNC + GHIA+ C + +R
Sbjct: 54 GHLAKD-CDLQEDEACYNCGRGGHIAKDCKEPKR 86
Score = 39.5 bits (88), Expect = 0.005
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +2
Query: 305 RHGHIARDFAQIPDEKS--CYNCNKTGHIARKC 397
R GHIA+D + E+ CYNC K GH+AR C
Sbjct: 73 RGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 105
Score = 36.7 bits (81), Expect = 0.032
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +2
Query: 311 GHIARDFAQIPDEKSCYNCNKTGHIARKCS 400
GH+ARD DE+ CY+C + GHI + C+
Sbjct: 99 GHLARD-CDHADEQKCYSCGEFGHIQKDCT 127
Score = 33.9 bits (74), Expect = 0.23
Identities = 12/30 (40%), Positives = 22/30 (73%)
Frame = +2
Query: 311 GHIARDFAQIPDEKSCYNCNKTGHIARKCS 400
GH+A + ++ E +CY C ++GH+AR+C+
Sbjct: 138 GHVAINCSKT-SEVNCYRCGESGHLARECT 166
Score = 33.1 bits (72), Expect = 0.40
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 13/56 (23%)
Frame = +1
Query: 133 VCYKCNRTGHFARECT-----------QGGVVSRD-SGFNRQREK-CFKCNRTGTL 261
+CY+C +GH A++C +GG +++D R+RE+ C+ C + G L
Sbjct: 46 ICYRCGESGHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHL 101
Score = 33.1 bits (72), Expect = 0.40
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 311 GHIARDFAQIPDEKSCYNCNKTGHIARKCS 400
GHI +D ++ CY C +TGH+A CS
Sbjct: 120 GHIQKDCTKV----KCYRCGETGHVAINCS 145
Score = 32.3 bits (70), Expect = 0.69
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 136 CYKCNRTGHFARECT 180
CY+C +GH ARECT
Sbjct: 152 CYRCGESGHLARECT 166
Score = 31.9 bits (69), Expect = 0.92
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Frame = +1
Query: 94 AQEFSKPIAMSSSVCYKCNRTGHFAREC----TQGGVVSRDSGFNRQ---REKCFKCNRT 252
A++ +P CY C + GH AR+C Q + G ++ + KC++C T
Sbjct: 78 AKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYRCGET 137
Query: 253 G 255
G
Sbjct: 138 G 138
>DQ091187-1|AAY89856.1| 178|Homo sapiens cellular nucleic acid
binding protein alpha variant 1 protein.
Length = 178
Score = 41.9 bits (94), Expect = 9e-04
Identities = 14/34 (41%), Positives = 25/34 (73%)
Frame = +2
Query: 311 GHIARDFAQIPDEKSCYNCNKTGHIARKCSDGRR 412
GH+A+D + ++++CYNC + GHIA+ C + +R
Sbjct: 61 GHLAKD-CDLQEDEACYNCGRGGHIAKDCKEPKR 93
Score = 41.1 bits (92), Expect = 0.001
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +1
Query: 121 MSSSVCYKCNRTGHFARECTQGG 189
MSS+ C+KC R+GH+AREC GG
Sbjct: 1 MSSNECFKCGRSGHWARECPTGG 23
Score = 39.5 bits (88), Expect = 0.005
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +2
Query: 305 RHGHIARDFAQIPDEKS--CYNCNKTGHIARKC 397
R GHIA+D + E+ CYNC K GH+AR C
Sbjct: 80 RGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 112
Score = 36.7 bits (81), Expect = 0.032
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +2
Query: 311 GHIARDFAQIPDEKSCYNCNKTGHIARKCS 400
GH+ARD DE+ CY+C + GHI + C+
Sbjct: 106 GHLARD-CDHADEQKCYSCGEFGHIQKDCT 134
Score = 33.9 bits (74), Expect = 0.23
Identities = 12/30 (40%), Positives = 22/30 (73%)
Frame = +2
Query: 311 GHIARDFAQIPDEKSCYNCNKTGHIARKCS 400
GH+A + ++ E +CY C ++GH+AR+C+
Sbjct: 145 GHVAINCSKT-SEVNCYRCGESGHLARECT 173
Score = 33.1 bits (72), Expect = 0.40
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 13/56 (23%)
Frame = +1
Query: 133 VCYKCNRTGHFARECT-----------QGGVVSRD-SGFNRQREK-CFKCNRTGTL 261
+CY+C +GH A++C +GG +++D R+RE+ C+ C + G L
Sbjct: 53 ICYRCGESGHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHL 108
Score = 33.1 bits (72), Expect = 0.40
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 311 GHIARDFAQIPDEKSCYNCNKTGHIARKCS 400
GHI +D ++ CY C +TGH+A CS
Sbjct: 127 GHIQKDCTKV----KCYRCGETGHVAINCS 152
Score = 32.3 bits (70), Expect = 0.69
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 136 CYKCNRTGHFARECT 180
CY+C +GH ARECT
Sbjct: 159 CYRCGESGHLARECT 173
Score = 31.9 bits (69), Expect = 0.92
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Frame = +1
Query: 94 AQEFSKPIAMSSSVCYKCNRTGHFAREC----TQGGVVSRDSGFNRQ---REKCFKCNRT 252
A++ +P CY C + GH AR+C Q + G ++ + KC++C T
Sbjct: 85 AKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYRCGET 144
Query: 253 G 255
G
Sbjct: 145 G 145
>BT019613-1|AAV38419.1| 178|Homo sapiens zinc finger protein 9 (a
cellular retroviral nucleic acid binding protein)
protein.
Length = 178
Score = 41.9 bits (94), Expect = 9e-04
Identities = 14/34 (41%), Positives = 25/34 (73%)
Frame = +2
Query: 311 GHIARDFAQIPDEKSCYNCNKTGHIARKCSDGRR 412
GH+A+D + ++++CYNC + GHIA+ C + +R
Sbjct: 61 GHLAKD-CDLQEDEACYNCGRGGHIAKDCKEPKR 93
Score = 41.1 bits (92), Expect = 0.001
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +1
Query: 121 MSSSVCYKCNRTGHFARECTQGG 189
MSS+ C+KC R+GH+AREC GG
Sbjct: 1 MSSNECFKCGRSGHWARECPTGG 23
Score = 39.5 bits (88), Expect = 0.005
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +2
Query: 305 RHGHIARDFAQIPDEKS--CYNCNKTGHIARKC 397
R GHIA+D + E+ CYNC K GH+AR C
Sbjct: 80 RGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 112
Score = 36.7 bits (81), Expect = 0.032
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +2
Query: 311 GHIARDFAQIPDEKSCYNCNKTGHIARKCS 400
GH+ARD DE+ CY+C + GHI + C+
Sbjct: 106 GHLARD-CDHADEQKCYSCGEFGHIQKDCT 134
Score = 33.9 bits (74), Expect = 0.23
Identities = 12/30 (40%), Positives = 22/30 (73%)
Frame = +2
Query: 311 GHIARDFAQIPDEKSCYNCNKTGHIARKCS 400
GH+A + ++ E +CY C ++GH+AR+C+
Sbjct: 145 GHVAINCSKT-SEVNCYRCGESGHLARECT 173
Score = 33.1 bits (72), Expect = 0.40
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 13/56 (23%)
Frame = +1
Query: 133 VCYKCNRTGHFARECT-----------QGGVVSRD-SGFNRQREK-CFKCNRTGTL 261
+CY+C +GH A++C +GG +++D R+RE+ C+ C + G L
Sbjct: 53 ICYRCGESGHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHL 108
Score = 33.1 bits (72), Expect = 0.40
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 311 GHIARDFAQIPDEKSCYNCNKTGHIARKCS 400
GHI +D ++ CY C +TGH+A CS
Sbjct: 127 GHIQKDCTKV----KCYRCGETGHVAINCS 152
Score = 32.3 bits (70), Expect = 0.69
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 136 CYKCNRTGHFARECT 180
CY+C +GH ARECT
Sbjct: 159 CYRCGESGHLARECT 173
Score = 31.9 bits (69), Expect = 0.92
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Frame = +1
Query: 94 AQEFSKPIAMSSSVCYKCNRTGHFAREC----TQGGVVSRDSGFNRQ---REKCFKCNRT 252
A++ +P CY C + GH AR+C Q + G ++ + KC++C T
Sbjct: 85 AKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYRCGET 144
Query: 253 G 255
G
Sbjct: 145 G 145
>U19765-1|AAA91782.1| 177|Homo sapiens nucleic acid binding protein
protein.
Length = 177
Score = 41.1 bits (92), Expect = 0.001
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +1
Query: 121 MSSSVCYKCNRTGHFARECTQGG 189
MSS+ C+KC R+GH+AREC GG
Sbjct: 1 MSSNECFKCGRSGHWARECPTGG 23
Score = 39.5 bits (88), Expect = 0.005
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +2
Query: 305 RHGHIARDFAQIPDEKS--CYNCNKTGHIARKC 397
R GHIA+D + E+ CYNC K GH+AR C
Sbjct: 79 RGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 111
Score = 37.9 bits (84), Expect = 0.014
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2
Query: 311 GHIARDFAQIPDEKSCYNCNKTGHIARKCSDGRR 412
GH+A+D E +CYNC + GHIA+ C + +R
Sbjct: 61 GHLAKDCDL--QEDACYNCGRGGHIAKDCKEPKR 92
Score = 36.7 bits (81), Expect = 0.032
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +2
Query: 311 GHIARDFAQIPDEKSCYNCNKTGHIARKCS 400
GH+ARD DE+ CY+C + GHI + C+
Sbjct: 105 GHLARD-CDHADEQKCYSCGEFGHIQKDCT 133
Score = 33.9 bits (74), Expect = 0.23
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 12/55 (21%)
Frame = +1
Query: 133 VCYKCNRTGHFARECT----------QGGVVSRD-SGFNRQREK-CFKCNRTGTL 261
+CY+C +GH A++C +GG +++D R+RE+ C+ C + G L
Sbjct: 53 ICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHL 107
Score = 33.9 bits (74), Expect = 0.23
Identities = 12/30 (40%), Positives = 22/30 (73%)
Frame = +2
Query: 311 GHIARDFAQIPDEKSCYNCNKTGHIARKCS 400
GH+A + ++ E +CY C ++GH+AR+C+
Sbjct: 144 GHVAINCSKT-SEVNCYRCGESGHLARECT 172
Score = 33.1 bits (72), Expect = 0.40
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 311 GHIARDFAQIPDEKSCYNCNKTGHIARKCS 400
GHI +D ++ CY C +TGH+A CS
Sbjct: 126 GHIQKDCTKV----KCYRCGETGHVAINCS 151
Score = 32.3 bits (70), Expect = 0.69
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +3
Query: 156 RAFRARMHAGGRGVAGFRFQSAT*EVL--QVQPHRHFARDCKEQADRCYRCNGTG 314
R R+R G GF+F S++ + + H A+DC Q D CY C G
Sbjct: 27 RGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGG 81
Score = 32.3 bits (70), Expect = 0.69
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 136 CYKCNRTGHFARECT 180
CY+C +GH ARECT
Sbjct: 158 CYRCGESGHLARECT 172
Score = 31.9 bits (69), Expect = 0.92
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Frame = +1
Query: 94 AQEFSKPIAMSSSVCYKCNRTGHFAREC----TQGGVVSRDSGFNRQ---REKCFKCNRT 252
A++ +P CY C + GH AR+C Q + G ++ + KC++C T
Sbjct: 84 AKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYRCGET 143
Query: 253 G 255
G
Sbjct: 144 G 144
>M28372-1|AAA61975.1| 177|Homo sapiens SRE-binding protein protein.
Length = 177
Score = 41.1 bits (92), Expect = 0.001
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +1
Query: 121 MSSSVCYKCNRTGHFARECTQGG 189
MSS+ C+KC R+GH+AREC GG
Sbjct: 1 MSSNECFKCGRSGHWARECPTGG 23
Score = 39.5 bits (88), Expect = 0.005
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +2
Query: 305 RHGHIARDFAQIPDEKS--CYNCNKTGHIARKC 397
R GHIA+D + E+ CYNC K GH+AR C
Sbjct: 79 RGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 111
Score = 37.9 bits (84), Expect = 0.014
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2
Query: 311 GHIARDFAQIPDEKSCYNCNKTGHIARKCSDGRR 412
GH+A+D E +CYNC + GHIA+ C + +R
Sbjct: 61 GHLAKDCDL--QEDACYNCGRGGHIAKDCKEPKR 92
Score = 36.7 bits (81), Expect = 0.032
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +2
Query: 311 GHIARDFAQIPDEKSCYNCNKTGHIARKCS 400
GH+ARD DE+ CY+C + GHI + C+
Sbjct: 105 GHLARD-CDHADEQKCYSCGEFGHIQKDCT 133
Score = 33.9 bits (74), Expect = 0.23
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 12/55 (21%)
Frame = +1
Query: 133 VCYKCNRTGHFARECT----------QGGVVSRD-SGFNRQREK-CFKCNRTGTL 261
+CY+C +GH A++C +GG +++D R+RE+ C+ C + G L
Sbjct: 53 ICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHL 107
Score = 33.9 bits (74), Expect = 0.23
Identities = 12/30 (40%), Positives = 22/30 (73%)
Frame = +2
Query: 311 GHIARDFAQIPDEKSCYNCNKTGHIARKCS 400
GH+A + ++ E +CY C ++GH+AR+C+
Sbjct: 144 GHVAINCSKT-SEVNCYRCGESGHLARECT 172
Score = 33.1 bits (72), Expect = 0.40
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 311 GHIARDFAQIPDEKSCYNCNKTGHIARKCS 400
GHI +D ++ CY C +TGH+A CS
Sbjct: 126 GHIQKDCTKV----KCYRCGETGHVAINCS 151
Score = 32.3 bits (70), Expect = 0.69
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +3
Query: 156 RAFRARMHAGGRGVAGFRFQSAT*EVL--QVQPHRHFARDCKEQADRCYRCNGTG 314
R R+R G GF+F S++ + + H A+DC Q D CY C G
Sbjct: 27 RGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGG 81
Score = 32.3 bits (70), Expect = 0.69
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 136 CYKCNRTGHFARECT 180
CY+C +GH ARECT
Sbjct: 158 CYRCGESGHLARECT 172
Score = 31.9 bits (69), Expect = 0.92
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Frame = +1
Query: 94 AQEFSKPIAMSSSVCYKCNRTGHFAREC----TQGGVVSRDSGFNRQ---REKCFKCNRT 252
A++ +P CY C + GH AR+C Q + G ++ + KC++C T
Sbjct: 84 AKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYRCGET 143
Query: 253 G 255
G
Sbjct: 144 G 144
>BC093058-1|AAH93058.1| 177|Homo sapiens CCHC-type zinc finger,
nucleic acid binding protein protein.
Length = 177
Score = 41.1 bits (92), Expect = 0.001
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +1
Query: 121 MSSSVCYKCNRTGHFARECTQGG 189
MSS+ C+KC R+GH+AREC GG
Sbjct: 1 MSSNECFKCGRSGHWARECPTGG 23
Score = 39.5 bits (88), Expect = 0.005
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +2
Query: 305 RHGHIARDFAQIPDEKS--CYNCNKTGHIARKC 397
R GHIA+D + E+ CYNC K GH+AR C
Sbjct: 79 RGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 111
Score = 37.9 bits (84), Expect = 0.014
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2
Query: 311 GHIARDFAQIPDEKSCYNCNKTGHIARKCSDGRR 412
GH+A+D E +CYNC + GHIA+ C + +R
Sbjct: 61 GHLAKDCDL--QEDACYNCGRGGHIAKDCKEPKR 92
Score = 36.7 bits (81), Expect = 0.032
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +2
Query: 311 GHIARDFAQIPDEKSCYNCNKTGHIARKCS 400
GH+ARD DE+ CY+C + GHI + C+
Sbjct: 105 GHLARD-CDHADEQKCYSCGEFGHIQKDCT 133
Score = 33.9 bits (74), Expect = 0.23
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 12/55 (21%)
Frame = +1
Query: 133 VCYKCNRTGHFARECT----------QGGVVSRD-SGFNRQREK-CFKCNRTGTL 261
+CY+C +GH A++C +GG +++D R+RE+ C+ C + G L
Sbjct: 53 ICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHL 107
Score = 33.9 bits (74), Expect = 0.23
Identities = 12/30 (40%), Positives = 22/30 (73%)
Frame = +2
Query: 311 GHIARDFAQIPDEKSCYNCNKTGHIARKCS 400
GH+A + ++ E +CY C ++GH+AR+C+
Sbjct: 144 GHVAINCSKT-SEVNCYRCGESGHLARECT 172
Score = 33.1 bits (72), Expect = 0.40
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 311 GHIARDFAQIPDEKSCYNCNKTGHIARKCS 400
GHI +D ++ CY C +TGH+A CS
Sbjct: 126 GHIQKDCTKV----KCYRCGETGHVAINCS 151
Score = 32.3 bits (70), Expect = 0.69
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +3
Query: 156 RAFRARMHAGGRGVAGFRFQSAT*EVL--QVQPHRHFARDCKEQADRCYRCNGTG 314
R R+R G GF+F S++ + + H A+DC Q D CY C G
Sbjct: 27 RGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGG 81
Score = 32.3 bits (70), Expect = 0.69
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 136 CYKCNRTGHFARECT 180
CY+C +GH ARECT
Sbjct: 158 CYRCGESGHLARECT 172
Score = 31.9 bits (69), Expect = 0.92
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Frame = +1
Query: 94 AQEFSKPIAMSSSVCYKCNRTGHFAREC----TQGGVVSRDSGFNRQ---REKCFKCNRT 252
A++ +P CY C + GH AR+C Q + G ++ + KC++C T
Sbjct: 84 AKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYRCGET 143
Query: 253 G 255
G
Sbjct: 144 G 144
>AY329622-1|AAR89462.1| 177|Homo sapiens zinc finger protein 9
protein.
Length = 177
Score = 41.1 bits (92), Expect = 0.001
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +1
Query: 121 MSSSVCYKCNRTGHFARECTQGG 189
MSS+ C+KC R+GH+AREC GG
Sbjct: 1 MSSNECFKCGRSGHWARECPTGG 23
Score = 39.5 bits (88), Expect = 0.005
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +2
Query: 305 RHGHIARDFAQIPDEKS--CYNCNKTGHIARKC 397
R GHIA+D + E+ CYNC K GH+AR C
Sbjct: 79 RGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 111
Score = 37.9 bits (84), Expect = 0.014
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2
Query: 311 GHIARDFAQIPDEKSCYNCNKTGHIARKCSDGRR 412
GH+A+D E +CYNC + GHIA+ C + +R
Sbjct: 61 GHLAKDCDL--QEDACYNCGRGGHIAKDCKEPKR 92
Score = 36.7 bits (81), Expect = 0.032
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +2
Query: 311 GHIARDFAQIPDEKSCYNCNKTGHIARKCS 400
GH+ARD DE+ CY+C + GHI + C+
Sbjct: 105 GHLARD-CDHADEQKCYSCGEFGHIQKDCT 133
Score = 33.9 bits (74), Expect = 0.23
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 12/55 (21%)
Frame = +1
Query: 133 VCYKCNRTGHFARECT----------QGGVVSRD-SGFNRQREK-CFKCNRTGTL 261
+CY+C +GH A++C +GG +++D R+RE+ C+ C + G L
Sbjct: 53 ICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHL 107
Score = 33.9 bits (74), Expect = 0.23
Identities = 12/30 (40%), Positives = 22/30 (73%)
Frame = +2
Query: 311 GHIARDFAQIPDEKSCYNCNKTGHIARKCS 400
GH+A + ++ E +CY C ++GH+AR+C+
Sbjct: 144 GHVAINCSKT-SEVNCYRCGESGHLARECT 172
Score = 33.1 bits (72), Expect = 0.40
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 311 GHIARDFAQIPDEKSCYNCNKTGHIARKCS 400
GHI +D ++ CY C +TGH+A CS
Sbjct: 126 GHIQKDCTKV----KCYRCGETGHVAINCS 151
Score = 32.3 bits (70), Expect = 0.69
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +3
Query: 156 RAFRARMHAGGRGVAGFRFQSAT*EVL--QVQPHRHFARDCKEQADRCYRCNGTG 314
R R+R G GF+F S++ + + H A+DC Q D CY C G
Sbjct: 27 RGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGG 81
Score = 32.3 bits (70), Expect = 0.69
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 136 CYKCNRTGHFARECT 180
CY+C +GH ARECT
Sbjct: 158 CYRCGESGHLARECT 172
Score = 31.9 bits (69), Expect = 0.92
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Frame = +1
Query: 94 AQEFSKPIAMSSSVCYKCNRTGHFAREC----TQGGVVSRDSGFNRQ---REKCFKCNRT 252
A++ +P CY C + GH AR+C Q + G ++ + KC++C T
Sbjct: 84 AKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYRCGET 143
Query: 253 G 255
G
Sbjct: 144 G 144
>BC021176-1|AAH21176.1| 166|Homo sapiens zinc finger, CCHC domain
containing 13 protein.
Length = 166
Score = 37.1 bits (82), Expect = 0.024
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 305 RHGHIARDFAQIPDEKSCYNCNKTGHIARKCS 400
R GH+ARD + ++K CY+C K GHI + C+
Sbjct: 96 RLGHLARDCDRQKEQK-CYSCGKLGHIQKDCA 126
Score = 36.3 bits (80), Expect = 0.043
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +1
Query: 106 SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGTL 261
+K + ++CY C R+GH A++C +D R R+ C+ C R G L
Sbjct: 57 AKNCVLLGNICYNCGRSGHIAKDC-------KDPKRER-RQHCYTCGRLGHL 100
Score = 35.5 bits (78), Expect = 0.074
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +2
Query: 311 GHIARDFAQIPDEKSCYNCNKTGHIARKCSDGR 409
GHI +D AQ+ CY C + GH+A CS R
Sbjct: 119 GHIQKDCAQV----KCYRCGEIGHVAINCSKAR 147
Score = 35.1 bits (77), Expect = 0.098
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 356 CYNCNKTGHIARKCSDGRR 412
CYNC ++GHIA+ C D +R
Sbjct: 67 CYNCGRSGHIAKDCKDPKR 85
Score = 35.1 bits (77), Expect = 0.098
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +2
Query: 305 RHGHIARDFAQIPDEKS--CYNCNKTGHIARKC 397
R GHIA+D E+ CY C + GH+AR C
Sbjct: 72 RSGHIAKDCKDPKRERRQHCYTCGRLGHLARDC 104
Score = 34.3 bits (75), Expect = 0.17
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 9/86 (10%)
Frame = +1
Query: 121 MSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKC------FKCNRTGTLRGTARNR 282
MSS + C +GH+AR C +GG R G + + +C + C G A+N
Sbjct: 1 MSSKDFFACGHSGHWARGCPRGGAGGRRGGGHGRGSQCGSTTLSYTCYCCGESGRNAKNC 60
Query: 283 L---TVATDVTARAHSARFRTDPGRE 351
+ + + H A+ DP RE
Sbjct: 61 VLLGNICYNCGRSGHIAKDCKDPKRE 86
Score = 32.3 bits (70), Expect = 0.69
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 136 CYKCNRTGHFARECTQGGVVSRDSGFNRQRE-KCFKCNRTGTLR 264
CY C R GH AR+C +RQ+E KC+ C + G ++
Sbjct: 91 CYTCGRLGHLARDC------------DRQKEQKCYSCGKLGHIQ 122
>U79569-1|AAD00321.1| 269|Homo sapiens no arches protein.
Length = 269
Score = 35.5 bits (78), Expect = 0.074
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = +1
Query: 43 NS*DN*SLNDRYISVLSAQEFSK----PIAMSSSVCYKCNRTGHFARECTQG 186
NS N + I V+ +Q S P + CYKC GH+A CT+G
Sbjct: 210 NSSPNQQRTPQVIGVMQSQNSSAGNRGPRPLEQVTCYKCGEKGHYANRCTKG 261
Score = 29.1 bits (62), Expect = 6.5
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +2
Query: 344 DEKSCYNCNKTGHIARKCSDG 406
++ +CY C + GH A +C+ G
Sbjct: 241 EQVTCYKCGEKGHYANRCTKG 261
>EF191081-1|ABN05292.1| 269|Homo sapiens cleavage and
polyadenylation specific factor 4, 30kDa protein.
Length = 269
Score = 35.5 bits (78), Expect = 0.074
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = +1
Query: 43 NS*DN*SLNDRYISVLSAQEFSK----PIAMSSSVCYKCNRTGHFARECTQG 186
NS N + I V+ +Q S P + CYKC GH+A CT+G
Sbjct: 210 NSSPNQQRTPQVIGVMQSQNSSAGNRGPRPLEQVTCYKCGEKGHYANRCTKG 261
Score = 29.1 bits (62), Expect = 6.5
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +2
Query: 344 DEKSCYNCNKTGHIARKCSDG 406
++ +CY C + GH A +C+ G
Sbjct: 241 EQVTCYKCGEKGHYANRCTKG 261
>CR542161-1|CAG46958.1| 269|Homo sapiens CPSF4 protein.
Length = 269
Score = 35.5 bits (78), Expect = 0.074
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = +1
Query: 43 NS*DN*SLNDRYISVLSAQEFSK----PIAMSSSVCYKCNRTGHFARECTQG 186
NS N + I V+ +Q S P + CYKC GH+A CT+G
Sbjct: 210 NSSPNQQRTPQVIGVMQSQNSSAGNRGPRPLEQVTCYKCGEKGHYANRCTKG 261
Score = 29.1 bits (62), Expect = 6.5
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +2
Query: 344 DEKSCYNCNKTGHIARKCSDG 406
++ +CY C + GH A +C+ G
Sbjct: 241 EQVTCYKCGEKGHYANRCTKG 261
>BC050738-1|AAH50738.1| 243|Homo sapiens CPSF4 protein protein.
Length = 243
Score = 33.9 bits (74), Expect = 0.23
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 112 PIAMSSSVCYKCNRTGHFARECTQG 186
P + CYKC GH+A CT+G
Sbjct: 211 PRPLEQVTCYKCGEKGHYANRCTKG 235
Score = 29.1 bits (62), Expect = 6.5
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +2
Query: 344 DEKSCYNCNKTGHIARKCSDG 406
++ +CY C + GH A +C+ G
Sbjct: 215 EQVTCYKCGEKGHYANRCTKG 235
>BC003101-1|AAH03101.1| 244|Homo sapiens cleavage and
polyadenylation specific factor 4, 30kDa protein.
Length = 244
Score = 33.9 bits (74), Expect = 0.23
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 112 PIAMSSSVCYKCNRTGHFARECTQG 186
P + CYKC GH+A CT+G
Sbjct: 212 PRPLEQVTCYKCGEKGHYANRCTKG 236
Score = 29.1 bits (62), Expect = 6.5
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +2
Query: 344 DEKSCYNCNKTGHIARKCSDG 406
++ +CY C + GH A +C+ G
Sbjct: 216 EQVTCYKCGEKGHYANRCTKG 236
>AY436367-1|AAR11855.1| 54|Homo sapiens cellular nucleic acid
binding protein protein.
Length = 54
Score = 33.9 bits (74), Expect = 0.23
Identities = 12/30 (40%), Positives = 22/30 (73%)
Frame = +2
Query: 311 GHIARDFAQIPDEKSCYNCNKTGHIARKCS 400
GH+A + ++ E +CY C ++GH+AR+C+
Sbjct: 21 GHVAINCSKT-SEVNCYRCGESGHLARECT 49
Score = 33.1 bits (72), Expect = 0.40
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 311 GHIARDFAQIPDEKSCYNCNKTGHIARKCS 400
GHI +D ++ CY C +TGH+A CS
Sbjct: 3 GHIQKDCTKV----KCYRCGETGHVAINCS 28
Score = 32.3 bits (70), Expect = 0.69
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 136 CYKCNRTGHFARECT 180
CY+C +GH ARECT
Sbjct: 35 CYRCGESGHLARECT 49
>AL832323-1|CAD38618.1| 899|Homo sapiens hypothetical protein
protein.
Length = 899
Score = 32.7 bits (71), Expect = 0.52
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +1
Query: 82 SVLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQR 225
+V++ S P + CY C +GH+A++C Q + + G R R
Sbjct: 836 NVVANTSGSGPKKNGNVSCYNCGVSGHYAQDCKQSSMEANQQGTYRLR 883
>AK000288-1|BAA91057.1| 298|Homo sapiens protein ( Homo sapiens
cDNA FLJ20281 fis, clone HEP03769. ).
Length = 298
Score = 32.7 bits (71), Expect = 0.52
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +1
Query: 82 SVLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQR 225
+V++ S P + CY C +GH+A++C Q + + G R R
Sbjct: 235 NVVANTSGSGPKKNGNVSCYNCGVSGHYAQDCKQSSMEANQQGTYRLR 282
>AB051531-1|BAB21835.1| 855|Homo sapiens KIAA1744 protein protein.
Length = 855
Score = 32.7 bits (71), Expect = 0.52
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +1
Query: 82 SVLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQR 225
+V++ S P + CY C +GH+A++C Q + + G R R
Sbjct: 792 NVVANTSGSGPKKNGNVSCYNCGVSGHYAQDCKQSSMEANQQGTYRLR 839
>Z95624-1|CAB09136.1| 278|Homo sapiens novel protein protein.
Length = 278
Score = 31.9 bits (69), Expect = 0.92
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -2
Query: 359 NMTSRPGSVRN-RALCARAVTSVATVSLFLAVPRKVPVRLHLKHFSRCR 216
N RP V + + LC R + S V L +P + +R HLK FS +
Sbjct: 181 NWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPIALRSHLKSFSMAK 229
>U05227-1|AAA17031.1| 278|Homo sapiens Rar protein protein.
Length = 278
Score = 31.9 bits (69), Expect = 0.92
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -2
Query: 347 RPGSVRN-RALCARAVTSVATVSLFLAVPRKVPVRLHLKHFS 225
RP V + + LC RAV S V L +P + +R HLK FS
Sbjct: 185 RPSKVLSLQDLCCRAVVSCTPVHLVDKLPLPIALRSHLKSFS 226
>BC101172-1|AAI01173.1| 278|Homo sapiens Ras-like GTPase-like
protein.
Length = 278
Score = 31.9 bits (69), Expect = 0.92
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -2
Query: 359 NMTSRPGSVRN-RALCARAVTSVATVSLFLAVPRKVPVRLHLKHFSRCR 216
N RP V + + LC R + S V L +P + +R HLK FS +
Sbjct: 181 NWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPIALRSHLKSFSMAK 229
>BC101171-1|AAI01172.1| 278|Homo sapiens Ras-like GTPase-like
protein.
Length = 278
Score = 31.9 bits (69), Expect = 0.92
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -2
Query: 359 NMTSRPGSVRN-RALCARAVTSVATVSLFLAVPRKVPVRLHLKHFSRCR 216
N RP V + + LC R + S V L +P + +R HLK FS +
Sbjct: 181 NWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPIALRSHLKSFSMAK 229
>BC101170-1|AAI01171.1| 278|Homo sapiens Ras-like GTPase-like
protein.
Length = 278
Score = 31.9 bits (69), Expect = 0.92
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -2
Query: 359 NMTSRPGSVRN-RALCARAVTSVATVSLFLAVPRKVPVRLHLKHFSRCR 216
N RP V + + LC R + S V L +P + +R HLK FS +
Sbjct: 181 NWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPIALRSHLKSFSMAK 229
>BC101169-1|AAI01170.1| 278|Homo sapiens Ras-like GTPase-like
protein.
Length = 278
Score = 31.9 bits (69), Expect = 0.92
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -2
Query: 359 NMTSRPGSVRN-RALCARAVTSVATVSLFLAVPRKVPVRLHLKHFSRCR 216
N RP V + + LC R + S V L +P + +R HLK FS +
Sbjct: 181 NWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPIALRSHLKSFSMAK 229
>BC018039-1|AAH18039.1| 278|Homo sapiens RAB40B, member RAS
oncogene family protein.
Length = 278
Score = 31.9 bits (69), Expect = 0.92
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -2
Query: 347 RPGSVRN-RALCARAVTSVATVSLFLAVPRKVPVRLHLKHFS 225
RP V + + LC RAV S V L +P + +R HLK FS
Sbjct: 185 RPSKVLSLQDLCCRAVVSCTPVHLVDKLPLPIALRSHLKSFS 226
>AF480924-1|AAM81186.1| 622|Homo sapiens gag protein protein.
Length = 622
Score = 31.9 bits (69), Expect = 0.92
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Frame = +1
Query: 121 MSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREK--CFKCNR 249
M +C++C R GH REC G R C +C R
Sbjct: 503 MRGRICFRCGREGHLMRECRAKFPARDRQGIENSRRPGLCPRCRR 547
Score = 28.7 bits (61), Expect = 8.5
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +2
Query: 317 IARDFAQIPDEKSCYNCNKTGHIARKC 397
+ R F Q + C+ C + GH+ R+C
Sbjct: 495 VTRQFRQNMRGRICFRCGREGHLMREC 521
>AB209711-1|BAD92948.1| 380|Homo sapiens RAB40B, member RAS
oncogene family variant protein.
Length = 380
Score = 31.9 bits (69), Expect = 0.92
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -2
Query: 347 RPGSVRN-RALCARAVTSVATVSLFLAVPRKVPVRLHLKHFS 225
RP V + + LC RAV S V L +P + +R HLK FS
Sbjct: 219 RPSKVLSLQDLCCRAVVSCTPVHLVDKLPLPIALRSHLKSFS 260
>Z98883-3|CAM26443.1| 281|Homo sapiens RAB40C, member RAS oncogene
family protein.
Length = 281
Score = 31.1 bits (67), Expect = 1.6
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -2
Query: 347 RPGSVRN-RALCARAVTSVATVSLFLAVPRKVPVRLHLKHFS 225
RP V + + LC RA+ S V L +P V ++ HLK FS
Sbjct: 185 RPNRVFSLQDLCCRAIVSCTPVHLIDKLPLPVTIKSHLKSFS 226
>Z84479-1|CAB06484.2| 281|Homo sapiens RAB40C, member RAS oncogene
family protein.
Length = 281
Score = 31.1 bits (67), Expect = 1.6
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -2
Query: 347 RPGSVRN-RALCARAVTSVATVSLFLAVPRKVPVRLHLKHFS 225
RP V + + LC RA+ S V L +P V ++ HLK FS
Sbjct: 185 RPNRVFSLQDLCCRAIVSCTPVHLIDKLPLPVTIKSHLKSFS 226
>BC028696-1|AAH28696.1| 281|Homo sapiens RAB40C, member RAS
oncogene family protein.
Length = 281
Score = 31.1 bits (67), Expect = 1.6
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -2
Query: 347 RPGSVRN-RALCARAVTSVATVSLFLAVPRKVPVRLHLKHFS 225
RP V + + LC RA+ S V L +P V ++ HLK FS
Sbjct: 185 RPNRVFSLQDLCCRAIVSCTPVHLIDKLPLPVTIKSHLKSFS 226
>AY823398-1|AAV83924.1| 262|Homo sapiens RAR-like GTPase variant
protein.
Length = 262
Score = 31.1 bits (67), Expect = 1.6
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -2
Query: 347 RPGSVRN-RALCARAVTSVATVSLFLAVPRKVPVRLHLKHFS 225
RP V + + LC RA+ S V L +P V ++ HLK FS
Sbjct: 166 RPNRVFSLQDLCCRAIVSCTPVHLIDKLPLPVTIKSHLKSFS 207
>AE006464-4|AAK61236.1| 281|Homo sapiens RAR (RAS like GTPase) like
protein.
Length = 281
Score = 31.1 bits (67), Expect = 1.6
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -2
Query: 347 RPGSVRN-RALCARAVTSVATVSLFLAVPRKVPVRLHLKHFS 225
RP V + + LC RA+ S V L +P V ++ HLK FS
Sbjct: 185 RPNRVFSLQDLCCRAIVSCTPVHLIDKLPLPVTIKSHLKSFS 226
>Z69733-1|CAI41993.1| 277|Homo sapiens RAB40A, member RAS oncogene
family protein.
Length = 277
Score = 30.3 bits (65), Expect = 2.8
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Frame = -2
Query: 359 NMTSRPGSVRN-RALCARAVTSVATVSLFLAVPRKVPVRLHLKHFSRCR------LKPES 201
N RP V + + LC R + S V L +P +R HLK FS + ++ S
Sbjct: 181 NWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTLRSHLKSFSMAKGLNARMMRGLS 240
Query: 200 RDTTPPCVHSRAKCPVRL 147
T H + C V +
Sbjct: 241 YSLTTSSTHKSSLCKVEI 258
>BC117232-1|AAI17233.1| 277|Homo sapiens RAB40A, member RAS
oncogene family protein.
Length = 277
Score = 30.3 bits (65), Expect = 2.8
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Frame = -2
Query: 359 NMTSRPGSVRN-RALCARAVTSVATVSLFLAVPRKVPVRLHLKHFSRCR------LKPES 201
N RP V + + LC R + S V L +P +R HLK FS + ++ S
Sbjct: 181 NWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTLRSHLKSFSMAKGLNARMMRGLS 240
Query: 200 RDTTPPCVHSRAKCPVRL 147
T H + C V +
Sbjct: 241 YSLTTSSTHKSSLCKVEI 258
>BC113501-1|AAI13502.1| 277|Homo sapiens RAB40A, member RAS
oncogene family protein.
Length = 277
Score = 30.3 bits (65), Expect = 2.8
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Frame = -2
Query: 359 NMTSRPGSVRN-RALCARAVTSVATVSLFLAVPRKVPVRLHLKHFSRCR------LKPES 201
N RP V + + LC R + S V L +P +R HLK FS + ++ S
Sbjct: 181 NWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTLRSHLKSFSMAKGLNARMMRGLS 240
Query: 200 RDTTPPCVHSRAKCPVRL 147
T H + C V +
Sbjct: 241 YSLTTSSTHKSSLCKVEI 258
>BC074855-1|AAH74855.1| 277|Homo sapiens RAB40A, member RAS
oncogene family protein.
Length = 277
Score = 30.3 bits (65), Expect = 2.8
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Frame = -2
Query: 359 NMTSRPGSVRN-RALCARAVTSVATVSLFLAVPRKVPVRLHLKHFSRCR------LKPES 201
N RP V + + LC R + S V L +P +R HLK FS + ++ S
Sbjct: 181 NWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTLRSHLKSFSMAKGLNARMMRGLS 240
Query: 200 RDTTPPCVHSRAKCPVRL 147
T H + C V +
Sbjct: 241 YSLTTSSTHKSSLCKVEI 258
>BC074854-1|AAH74854.1| 277|Homo sapiens RAB40A, member RAS
oncogene family protein.
Length = 277
Score = 30.3 bits (65), Expect = 2.8
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Frame = -2
Query: 359 NMTSRPGSVRN-RALCARAVTSVATVSLFLAVPRKVPVRLHLKHFSRCR------LKPES 201
N RP V + + LC R + S V L +P +R HLK FS + ++ S
Sbjct: 181 NWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTLRSHLKSFSMAKGLNARMMRGLS 240
Query: 200 RDTTPPCVHSRAKCPVRL 147
T H + C V +
Sbjct: 241 YSLTTSSTHKSSLCKVEI 258
>AK091495-1|BAC03676.1| 212|Homo sapiens protein ( Homo sapiens
cDNA FLJ34176 fis, clone FCBBF3016178. ).
Length = 212
Score = 30.3 bits (65), Expect = 2.8
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 136 CYKCNRTGHFARECTQ 183
CY C + GHF +EC Q
Sbjct: 137 CYNCEKPGHFKKECRQ 152
Score = 29.1 bits (62), Expect = 6.5
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +2
Query: 341 PDEKSCYNCNKTGHIARKC 397
P CYNC K GH ++C
Sbjct: 132 PKVGKCYNCEKPGHFKKEC 150
>AF132748-1|AAL75949.1| 277|Homo sapiens Rar-2 protein protein.
Length = 277
Score = 30.3 bits (65), Expect = 2.8
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Frame = -2
Query: 359 NMTSRPGSVRN-RALCARAVTSVATVSLFLAVPRKVPVRLHLKHFSRCR------LKPES 201
N RP V + + LC R + S V L +P +R HLK FS + ++ S
Sbjct: 181 NWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTLRSHLKSFSMAKGLNARMMRGLS 240
Query: 200 RDTTPPCVHSRAKCPVRL 147
T H + C V +
Sbjct: 241 YSLTTSSTHKSSLCKVEI 258
>AB232637-1|BAF02899.1| 277|Homo sapiens Rab40A protein.
Length = 277
Score = 30.3 bits (65), Expect = 2.8
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Frame = -2
Query: 359 NMTSRPGSVRN-RALCARAVTSVATVSLFLAVPRKVPVRLHLKHFSRCR------LKPES 201
N RP V + + LC R + S V L +P +R HLK FS + ++ S
Sbjct: 181 NWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTLRSHLKSFSMAKGLNARMMRGLS 240
Query: 200 RDTTPPCVHSRAKCPVRL 147
T H + C V +
Sbjct: 241 YSLTTSSTHKSSLCKVEI 258
>AF422143-1|AAL60514.1| 278|Homo sapiens SOCS box containing
protein RAR2A protein.
Length = 278
Score = 29.9 bits (64), Expect = 3.7
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -2
Query: 359 NMTSRPGSVRN-RALCARAVTSVATVSLFLAVPRKVPVRLHLKHFSRCR 216
N RP V + + LC R + S V L +P +R HLK FS +
Sbjct: 181 NWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTLRSHLKSFSMAK 229
>D83776-1|BAA12105.1| 1516|Homo sapiens KIAA0191 protein.
Length = 1516
Score = 29.5 bits (63), Expect = 4.9
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 314 HIARDFAQIPDEKSCYNCNKTGHIARKCSD 403
H RDF P + C+ C GH+ R+C +
Sbjct: 1218 HDTRDFRD-PRDLRCFICGDAGHVRRECPE 1246
>BC131734-1|AAI31735.1| 1645|Homo sapiens zinc finger, CCHC domain
containing 11 protein.
Length = 1645
Score = 29.5 bits (63), Expect = 4.9
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 314 HIARDFAQIPDEKSCYNCNKTGHIARKCSD 403
H RDF P + C+ C GH+ R+C +
Sbjct: 1347 HDTRDFRD-PRDLRCFICGDAGHVRRECPE 1375
>BC101478-1|AAI01479.1| 949|Homo sapiens zinc finger, CCHC domain
containing 14 protein.
Length = 949
Score = 29.5 bits (63), Expect = 4.9
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 353 SCYNCNKTGHIARKC 397
SCYNC TGH A+ C
Sbjct: 907 SCYNCGATGHRAQDC 921
>BC051694-1|AAH51694.1| 677|Homo sapiens similar to KIAA1680
protein protein.
Length = 677
Score = 29.5 bits (63), Expect = 4.9
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -2
Query: 404 RRNTSVRCGPSCCSCNMTSRPGSVRNRALCARAVTSVATVSLFLAV 267
R VR PSC S ++T R GS L + +T+ T S FLA+
Sbjct: 219 REPVLVRASPSC-SVDVTERAGSSLQSPLLSADLTTAQTPSEFLAL 263
>AL138849-1|CAI23476.1| 1644|Homo sapiens zinc finger, CCHC domain
containing 11 protein.
Length = 1644
Score = 29.5 bits (63), Expect = 4.9
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 314 HIARDFAQIPDEKSCYNCNKTGHIARKCSD 403
H RDF P + C+ C GH+ R+C +
Sbjct: 1346 HDTRDFRD-PRDLRCFICGDAGHVRRECPE 1374
>AL117532-1|CAB55981.1| 845|Homo sapiens hypothetical protein
protein.
Length = 845
Score = 29.5 bits (63), Expect = 4.9
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 353 SCYNCNKTGHIARKC 397
SCYNC TGH A+ C
Sbjct: 790 SCYNCGATGHRAQDC 804
>AB051467-1|BAB21771.1| 902|Homo sapiens KIAA1680 protein protein.
Length = 902
Score = 29.5 bits (63), Expect = 4.9
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -2
Query: 404 RRNTSVRCGPSCCSCNMTSRPGSVRNRALCARAVTSVATVSLFLAV 267
R VR PSC S ++T R GS L + +T+ T S FLA+
Sbjct: 221 REPVLVRASPSC-SVDVTERAGSSLQSPLLSADLTTAQTPSEFLAL 265
>AB030243-1|BAB83129.1| 949|Homo sapiens BDG-29 protein.
Length = 949
Score = 29.5 bits (63), Expect = 4.9
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 353 SCYNCNKTGHIARKC 397
SCYNC TGH A+ C
Sbjct: 907 SCYNCGATGHRAQDC 921
>AB011151-1|BAA25505.2| 910|Homo sapiens KIAA0579 protein protein.
Length = 910
Score = 29.5 bits (63), Expect = 4.9
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 353 SCYNCNKTGHIARKC 397
SCYNC TGH A+ C
Sbjct: 868 SCYNCGATGHRAQDC 882
>U89505-1|AAC51293.1| 366|Homo sapiens Hlark protein.
Length = 366
Score = 29.1 bits (62), Expect = 6.5
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Frame = +1
Query: 130 SVCYKCNRTGHFAREC---TQGGVVSRDSGFNRQ 222
S CY+C + GH+++EC G V +N Q
Sbjct: 160 SGCYRCGKEGHWSKECPIDRSGRVADLTEQYNEQ 193
Score = 28.7 bits (61), Expect = 8.5
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +2
Query: 344 DEKSCYNCNKTGHIARKC 397
D+ CY C K GH +++C
Sbjct: 158 DQSGCYRCGKEGHWSKEC 175
>BC063524-1|AAH63524.1| 919|Homo sapiens RBBP6 protein protein.
Length = 919
Score = 29.1 bits (62), Expect = 6.5
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +1
Query: 127 SSVCYKCNRTGHFARECTQGGVVSRDSG 210
S C++C + GH+ + C G + +SG
Sbjct: 158 SYTCFRCGKPGHYIKNCPTNGDKNFESG 185
>BC032735-1|AAH32735.1| 364|Homo sapiens RNA binding motif protein
4 protein.
Length = 364
Score = 29.1 bits (62), Expect = 6.5
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Frame = +1
Query: 130 SVCYKCNRTGHFAREC---TQGGVVSRDSGFNRQ 222
S CY+C + GH+++EC G V +N Q
Sbjct: 160 SGCYRCGKEGHWSKECPIDRSGRVADLTEQYNEQ 193
Score = 28.7 bits (61), Expect = 8.5
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +2
Query: 344 DEKSCYNCNKTGHIARKC 397
D+ CY C K GH +++C
Sbjct: 158 DQSGCYRCGKEGHWSKEC 175
>BC000307-1|AAH00307.1| 364|Homo sapiens RNA binding motif protein
4 protein.
Length = 364
Score = 29.1 bits (62), Expect = 6.5
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Frame = +1
Query: 130 SVCYKCNRTGHFAREC---TQGGVVSRDSGFNRQ 222
S CY+C + GH+++EC G V +N Q
Sbjct: 160 SGCYRCGKEGHWSKECPIDRSGRVADLTEQYNEQ 193
Score = 28.7 bits (61), Expect = 8.5
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +2
Query: 344 DEKSCYNCNKTGHIARKC 397
D+ CY C K GH +++C
Sbjct: 158 DQSGCYRCGKEGHWSKEC 175
>AY072922-1|AAL68925.1| 1625|Homo sapiens p53-associated cellular
protein PACT protein.
Length = 1625
Score = 29.1 bits (62), Expect = 6.5
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +1
Query: 127 SSVCYKCNRTGHFARECTQGGVVSRDSG 210
S C++C + GH+ + C G + +SG
Sbjct: 25 SYTCFRCGKPGHYIKNCPTNGDKNFESG 52
>AB112075-1|BAC77637.1| 1758|Homo sapiens retinoblastoma binding
protein 6 isoform 2 protein.
Length = 1758
Score = 29.1 bits (62), Expect = 6.5
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +1
Query: 127 SSVCYKCNRTGHFARECTQGGVVSRDSG 210
S C++C + GH+ + C G + +SG
Sbjct: 158 SYTCFRCGKPGHYIKNCPTNGDKNFESG 185
>AB112074-1|BAC77636.1| 1792|Homo sapiens retinoblastoma binding
protein 6 isoform 1 protein.
Length = 1792
Score = 29.1 bits (62), Expect = 6.5
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +1
Query: 127 SSVCYKCNRTGHFARECTQGGVVSRDSG 210
S C++C + GH+ + C G + +SG
Sbjct: 158 SYTCFRCGKPGHYIKNCPTNGDKNFESG 185
>BC004951-1|AAH04951.1| 359|Homo sapiens RNA binding motif protein
4B protein.
Length = 359
Score = 28.7 bits (61), Expect = 8.5
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +2
Query: 344 DEKSCYNCNKTGHIARKC 397
D+ CY C K GH +++C
Sbjct: 158 DQSGCYRCGKEGHWSKEC 175
Score = 28.7 bits (61), Expect = 8.5
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +1
Query: 130 SVCYKCNRTGHFAREC 177
S CY+C + GH+++EC
Sbjct: 160 SGCYRCGKEGHWSKEC 175
>BC003503-1|AAH03503.1| 359|Homo sapiens RNA binding motif protein
4B protein.
Length = 359
Score = 28.7 bits (61), Expect = 8.5
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +2
Query: 344 DEKSCYNCNKTGHIARKC 397
D+ CY C K GH +++C
Sbjct: 158 DQSGCYRCGKEGHWSKEC 175
Score = 28.7 bits (61), Expect = 8.5
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +1
Query: 130 SVCYKCNRTGHFAREC 177
S CY+C + GH+++EC
Sbjct: 160 SGCYRCGKEGHWSKEC 175
>AJ312399-1|CAC42883.1| 655|Homo sapiens leishmanolysin-like
peptidase, variant 1 protein.
Length = 655
Score = 28.7 bits (61), Expect = 8.5
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +2
Query: 143 SATGPGISRANARRGAWCRGIPVSIGNVRSASSATAQAL 259
S +GPG SR W R + + +G +R+++++T +L
Sbjct: 20 SGSGPGRSRWRWSGSVWVRSVLLLLGGLRASATSTPVSL 58
>AF307451-1|AAK30049.1| 578|Homo sapiens Cat eye syndrome critical
region candidate gene number 6 protein.
Length = 578
Score = 28.7 bits (61), Expect = 8.5
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = -2
Query: 383 CGPSCCSCNMTSRPGSVRNRALCA 312
C P CC C RPG R CA
Sbjct: 168 CCPCCCCCGCPDRPGRRGRRRGCA 191
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,139,443
Number of Sequences: 237096
Number of extensions: 1217482
Number of successful extensions: 5110
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 4325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5079
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3259265358
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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