Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0915X.Seq
(423 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical ... 42 2e-04
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 32 0.15
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 32 0.15
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 32 0.15
Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical pr... 32 0.19
AC006672-5|AAM98003.1| 42|Caenorhabditis elegans Hypothetical ... 32 0.19
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 31 0.45
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 31 0.45
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 31 0.45
AF100656-7|AAF99964.2| 615|Caenorhabditis elegans Hypothetical ... 30 0.79
AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical ... 30 0.79
U80837-3|AAB37904.2| 384|Caenorhabditis elegans Hypothetical pr... 29 1.0
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 29 1.8
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 29 1.8
Z82287-5|CAB05315.1| 328|Caenorhabditis elegans Hypothetical pr... 28 2.4
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ... 28 2.4
U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical pr... 28 3.2
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 28 3.2
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 28 3.2
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 27 4.2
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 27 4.2
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 27 4.2
AC084197-38|AAU87807.1| 186|Caenorhabditis elegans Hypothetical... 27 4.2
Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical pr... 27 5.5
X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase... 27 5.5
D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosi... 27 5.5
AF045646-4|AAK29837.2| 295|Caenorhabditis elegans Hypothetical ... 27 5.5
AF045646-3|AAK29836.2| 432|Caenorhabditis elegans Hypothetical ... 27 5.5
Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical pr... 27 7.3
Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical pr... 27 7.3
U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein. 27 7.3
U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein. 27 7.3
Z84574-8|CAE54891.1| 921|Caenorhabditis elegans Hypothetical pr... 26 9.7
Z84574-7|CAB06544.3| 928|Caenorhabditis elegans Hypothetical pr... 26 9.7
Z84574-1|CAE54890.1| 577|Caenorhabditis elegans Hypothetical pr... 26 9.7
Z49068-2|CAA88855.1| 389|Caenorhabditis elegans Hypothetical pr... 26 9.7
U21324-13|AAA62558.1| 357|Caenorhabditis elegans Hypothetical p... 26 9.7
AL031630-5|CAA20985.1| 915|Caenorhabditis elegans Hypothetical ... 26 9.7
AL023844-8|CAA19534.1| 396|Caenorhabditis elegans Hypothetical ... 26 9.7
AL022593-4|CAE54889.1| 921|Caenorhabditis elegans Hypothetical ... 26 9.7
AL022593-3|CAA18635.3| 928|Caenorhabditis elegans Hypothetical ... 26 9.7
>AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical
protein K08D12.3a protein.
Length = 151
Score = 41.9 bits (94), Expect = 2e-04
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +1
Query: 130 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTG 255
S CY C TGHF+R+C +GG G C+ C G
Sbjct: 35 STCYNCQETGHFSRDCPKGGSGGGQRGGGGGGGSCYNCGGRG 76
Score = 40.7 bits (91), Expect = 4e-04
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +1
Query: 136 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTG 255
CY C R+GH +RECT+ G + + ++C++C TG
Sbjct: 109 CYNCGRSGHISRECTESG--------SAEEKRCYQCQETG 140
Score = 39.5 bits (88), Expect = 0.001
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Frame = +2
Query: 305 RHGHIARDFAQI--PDEKSCYNCNKTGHIARKC 397
R GHI+R+ + +EK CY C +TGHI+R C
Sbjct: 114 RSGHISRECTESGSAEEKRCYQCQETGHISRDC 146
Score = 35.1 bits (77), Expect = 0.021
Identities = 16/45 (35%), Positives = 19/45 (42%)
Frame = +1
Query: 121 MSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTG 255
MS CYKC + GH +R C G G C+ C TG
Sbjct: 1 MSDRNCYKCQQPGHISRNCPNGESDGGRRG-GGGGSTCYNCQETG 44
Score = 33.1 bits (72), Expect = 0.084
Identities = 9/18 (50%), Positives = 16/18 (88%)
Frame = +2
Query: 350 KSCYNCNKTGHIARKCSD 403
+ CYNC ++GHI+R+C++
Sbjct: 107 QKCYNCGRSGHISRECTE 124
Score = 32.3 bits (70), Expect = 0.15
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 353 SCYNCNKTGHIARKCSDG 406
+CYNC +TGH +R C G
Sbjct: 36 TCYNCQETGHFSRDCPKG 53
Score = 32.3 bits (70), Expect = 0.15
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 8/48 (16%)
Frame = +1
Query: 136 CYKCNRTGHFARECT-------QGGVVSR-DSGFNRQREKCFKCNRTG 255
CY C GH++R+C GG R G + +KC+ C R+G
Sbjct: 69 CYNCGGRGHYSRDCPSARSEGGSGGYGGRGGEGRSFGGQKCYNCGRSG 116
Score = 31.9 bits (69), Expect = 0.19
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 347 EKSCYNCNKTGHIARKCSDG 406
+++CY C + GHI+R C +G
Sbjct: 3 DRNCYKCQQPGHISRNCPNG 22
Score = 29.5 bits (63), Expect = 1.0
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 353 SCYNCNKTGHIARKCSDGR 409
SCYNC GH +R C R
Sbjct: 68 SCYNCGGRGHYSRDCPSAR 86
Score = 29.1 bits (62), Expect = 1.4
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +1
Query: 136 CYKCNRTGHFAREC 177
CY+C TGH +R+C
Sbjct: 133 CYQCQETGHISRDC 146
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 32.3 bits (70), Expect = 0.15
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = +2
Query: 311 GHIARDFAQIPDEKS---CYNCNKTGHIARKCSDGRR 412
GH + D + E+ CYNC + GH +R+C++ R+
Sbjct: 167 GHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERK 203
Score = 31.5 bits (68), Expect = 0.26
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 133 VCYKCNRTGHFARECTQ 183
VCY C + GH +RECT+
Sbjct: 184 VCYNCQQPGHTSRECTE 200
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 32.3 bits (70), Expect = 0.15
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = +2
Query: 311 GHIARDFAQIPDEKS---CYNCNKTGHIARKCSDGRR 412
GH + D + E+ CYNC + GH +R+C++ R+
Sbjct: 167 GHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERK 203
Score = 31.5 bits (68), Expect = 0.26
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 133 VCYKCNRTGHFARECTQ 183
VCY C + GH +RECT+
Sbjct: 184 VCYNCQQPGHTSRECTE 200
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 32.3 bits (70), Expect = 0.15
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = +2
Query: 311 GHIARDFAQIPDEKS---CYNCNKTGHIARKCSDGRR 412
GH + D + E+ CYNC + GH +R+C++ R+
Sbjct: 167 GHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERK 203
Score = 31.5 bits (68), Expect = 0.26
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 133 VCYKCNRTGHFARECTQ 183
VCY C + GH +RECT+
Sbjct: 184 VCYNCQQPGHTSRECTE 200
>Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical
protein F11A10.8 protein.
Length = 302
Score = 31.9 bits (69), Expect = 0.19
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 121 MSSSVCYKCNRTGHFARECTQGGV 192
+S CYKC GH+A C +G +
Sbjct: 247 LSDVTCYKCGEKGHYANRCHKGAL 270
Score = 31.5 bits (68), Expect = 0.26
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Frame = +2
Query: 314 HIARDFAQIPDEKS-----CYNCNKTGHIARKCSDG 406
H D + IPD+K+ CY C + GH A +C G
Sbjct: 233 HHRVDLSLIPDKKNLSDVTCYKCGEKGHYANRCHKG 268
>AC006672-5|AAM98003.1| 42|Caenorhabditis elegans Hypothetical
protein K08D12.3b protein.
Length = 42
Score = 31.9 bits (69), Expect = 0.19
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 121 MSSSVCYKCNRTGHFARECTQG 186
MS CYKC + GH +R C G
Sbjct: 1 MSDRNCYKCQQPGHISRNCPNG 22
Score = 31.9 bits (69), Expect = 0.19
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 347 EKSCYNCNKTGHIARKCSDG 406
+++CY C + GHI+R C +G
Sbjct: 3 DRNCYKCQQPGHISRNCPNG 22
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 30.7 bits (66), Expect = 0.45
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = +2
Query: 311 GHIARDFAQIPDEKS---CYNCNKTGHIARKCSDGRR 412
GH + D + E+ CYNC + GH +R C + R+
Sbjct: 266 GHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERK 302
Score = 30.7 bits (66), Expect = 0.45
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = +2
Query: 311 GHIARDFAQIPDEKS---CYNCNKTGHIARKCSDGRR 412
GH + D + E+ CYNC + GH +R C + R+
Sbjct: 380 GHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERK 416
Score = 27.5 bits (58), Expect = 4.2
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +1
Query: 133 VCYKCNRTGHFARECTQ 183
VCY C + GH +R+C +
Sbjct: 283 VCYNCQQPGHNSRDCPE 299
Score = 27.5 bits (58), Expect = 4.2
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +1
Query: 133 VCYKCNRTGHFARECTQ 183
VCY C + GH +R+C +
Sbjct: 397 VCYNCQQPGHNSRDCPE 413
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 30.7 bits (66), Expect = 0.45
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = +2
Query: 311 GHIARDFAQIPDEKS---CYNCNKTGHIARKCSDGRR 412
GH + D + E+ CYNC + GH +R C + R+
Sbjct: 266 GHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERK 302
Score = 30.7 bits (66), Expect = 0.45
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = +2
Query: 311 GHIARDFAQIPDEKS---CYNCNKTGHIARKCSDGRR 412
GH + D + E+ CYNC + GH +R C + R+
Sbjct: 380 GHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERK 416
Score = 27.5 bits (58), Expect = 4.2
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +1
Query: 133 VCYKCNRTGHFARECTQ 183
VCY C + GH +R+C +
Sbjct: 283 VCYNCQQPGHNSRDCPE 299
Score = 27.5 bits (58), Expect = 4.2
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +1
Query: 133 VCYKCNRTGHFARECTQ 183
VCY C + GH +R+C +
Sbjct: 397 VCYNCQQPGHNSRDCPE 413
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 30.7 bits (66), Expect = 0.45
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = +2
Query: 311 GHIARDFAQIPDEKS---CYNCNKTGHIARKCSDGRR 412
GH + D + E+ CYNC + GH +R C + R+
Sbjct: 266 GHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERK 302
Score = 30.7 bits (66), Expect = 0.45
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = +2
Query: 311 GHIARDFAQIPDEKS---CYNCNKTGHIARKCSDGRR 412
GH + D + E+ CYNC + GH +R C + R+
Sbjct: 380 GHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERK 416
Score = 27.5 bits (58), Expect = 4.2
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +1
Query: 133 VCYKCNRTGHFARECTQ 183
VCY C + GH +R+C +
Sbjct: 283 VCYNCQQPGHNSRDCPE 299
Score = 27.5 bits (58), Expect = 4.2
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +1
Query: 133 VCYKCNRTGHFARECTQ 183
VCY C + GH +R+C +
Sbjct: 397 VCYNCQQPGHNSRDCPE 413
>AF100656-7|AAF99964.2| 615|Caenorhabditis elegans Hypothetical
protein F49F1.8 protein.
Length = 615
Score = 29.9 bits (64), Expect = 0.79
Identities = 10/36 (27%), Positives = 14/36 (38%)
Frame = +1
Query: 136 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKC 243
C+ C GH AR C + + G+ Q C
Sbjct: 576 CHYCKNVGHMARNCKKKAFAEKRKGYEDQARSITSC 611
>AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical
protein K02F6.1 protein.
Length = 783
Score = 29.9 bits (64), Expect = 0.79
Identities = 18/75 (24%), Positives = 33/75 (44%)
Frame = +1
Query: 136 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGTLRGTARNRLTVATDVTARA 315
CYKC GH +++C Q S +SG ++ + + N TL + + + + +
Sbjct: 313 CYKCKVVGHVSKDCPQS---STNSGVTNRKTEHSEVN---TLEVGSGRQTSPSLRLNVEG 366
Query: 316 HSARFRTDPGREVML 360
F D G ++ L
Sbjct: 367 QQIDFTFDTGSDITL 381
>U80837-3|AAB37904.2| 384|Caenorhabditis elegans Hypothetical
protein F07E5.5 protein.
Length = 384
Score = 29.5 bits (63), Expect = 1.0
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = +1
Query: 124 SSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTG 255
S VC+KC H EC + GV GF CF C + G
Sbjct: 252 SDGVCFKCGSMEHSIHECKKKGV----KGF--PYATCFVCKQVG 289
Score = 26.2 bits (55), Expect = 9.7
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +1
Query: 130 SVCYKCNRTGHFARECTQ 183
+ C+ C + GH +R+C Q
Sbjct: 280 ATCFVCKQVGHISRDCHQ 297
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 28.7 bits (61), Expect = 1.8
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 353 SCYNCNKTGHIARKCSDGRR 412
+C+NC K GH A +CS +R
Sbjct: 203 TCFNCKKYGHRATECSAPQR 222
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +1
Query: 127 SSVCYKCNRTGHFARECTQGGVVSRDSGF-NRQREKCFKCNRTGTLRGT 270
S+ C+ C + GH A EC+ + G N + +C ++ G T
Sbjct: 201 SNTCFNCKKYGHRATECSAPQRECANCGDPNHRANECASWSKNGVQEPT 249
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 28.7 bits (61), Expect = 1.8
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 353 SCYNCNKTGHIARKCSDGRR 412
+C+NC K GH A +CS +R
Sbjct: 203 TCFNCKKYGHRATECSAPQR 222
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +1
Query: 127 SSVCYKCNRTGHFARECTQGGVVSRDSGF-NRQREKCFKCNRTGTLRGT 270
S+ C+ C + GH A EC+ + G N + +C ++ G T
Sbjct: 201 SNTCFNCKKYGHRATECSAPQRECANCGDPNHRANECASWSKNGVQEPT 249
>Z82287-5|CAB05315.1| 328|Caenorhabditis elegans Hypothetical
protein ZK550.5 protein.
Length = 328
Score = 28.3 bits (60), Expect = 2.4
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Frame = +1
Query: 184 GGVVSRDSGFNRQREKCFKCNRTGT----LRGTARNRLTVATDVTARAHSARFRTDPGRE 351
G +R GF R+ C N T ++GTA+ + R H R+ PG+E
Sbjct: 248 GSGANRSEGF-RKAISCHYANYDHTKYIDVKGTAQEEAGKQIEDIIRKHPKRYAVKPGQE 306
Query: 352 VMLQL 366
V +L
Sbjct: 307 VTFEL 311
>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
protein H43E16.1 protein.
Length = 1203
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -1
Query: 336 CAKSRAMCPCRYICSNGQPVPCSPSQSACAVALEALLTLPIET 208
C K+ C +CS PV C+ + SA A T+P+ T
Sbjct: 326 CNKNIIQTDCP-VCSTAAPVVCTTASSAPASTAVVTTTMPVTT 367
>U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical protein
K10D2.3 protein.
Length = 1425
Score = 27.9 bits (59), Expect = 3.2
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 136 CYKCNRTGHFARECTQ 183
C++C+R GHF C Q
Sbjct: 1357 CHQCHRIGHFVESCPQ 1372
Score = 26.2 bits (55), Expect = 9.7
Identities = 6/19 (31%), Positives = 11/19 (57%)
Frame = +2
Query: 341 PDEKSCYNCNKTGHIARKC 397
P ++ C+ C++ GH C
Sbjct: 1352 PTDRQCHQCHRIGHFVESC 1370
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 27.9 bits (59), Expect = 3.2
Identities = 7/16 (43%), Positives = 13/16 (81%)
Frame = +2
Query: 350 KSCYNCNKTGHIARKC 397
+ C+NC + GHI+++C
Sbjct: 570 RGCHNCGEEGHISKEC 585
Score = 27.9 bits (59), Expect = 3.2
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +2
Query: 311 GHIARDFAQIPDEKS-CYNCNKTGHIARKCSDGR 409
GH A D Q + C NC + GH A+ C + R
Sbjct: 625 GHFAVDCDQPKVPRGPCRNCGQEGHFAKDCQNER 658
Score = 26.6 bits (56), Expect = 7.3
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +2
Query: 311 GHIAR--DFAQIPDEKSCYNCNKTGHIARKCSDGR 409
GHI++ D ++P C NC + GH A C R
Sbjct: 579 GHISKECDKPKVP-RFPCRNCEQLGHFASDCDQPR 612
Score = 26.2 bits (55), Expect = 9.7
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Frame = +1
Query: 136 CYKCNRTGHFARECTQGGV---VSRDSGFNRQREKCFKCNRTGTLRGTARN 279
C C + GHFA +C Q V R+ G + C++ RG RN
Sbjct: 595 CRNCEQLGHFASDCDQPRVPRGPCRNCGI--EGHFAVDCDQPKVPRGPCRN 643
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 27.9 bits (59), Expect = 3.2
Identities = 7/16 (43%), Positives = 13/16 (81%)
Frame = +2
Query: 350 KSCYNCNKTGHIARKC 397
+ C+NC + GHI+++C
Sbjct: 570 RGCHNCGEEGHISKEC 585
Score = 27.9 bits (59), Expect = 3.2
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +2
Query: 311 GHIARDFAQIPDEKS-CYNCNKTGHIARKCSDGR 409
GH A D Q + C NC + GH A+ C + R
Sbjct: 625 GHFAVDCDQPKVPRGPCRNCGQEGHFAKDCQNER 658
Score = 26.6 bits (56), Expect = 7.3
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +2
Query: 311 GHIAR--DFAQIPDEKSCYNCNKTGHIARKCSDGR 409
GHI++ D ++P C NC + GH A C R
Sbjct: 579 GHISKECDKPKVP-RFPCRNCEQLGHFASDCDQPR 612
Score = 26.2 bits (55), Expect = 9.7
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Frame = +1
Query: 136 CYKCNRTGHFARECTQGGV---VSRDSGFNRQREKCFKCNRTGTLRGTARN 279
C C + GHFA +C Q V R+ G + C++ RG RN
Sbjct: 595 CRNCEQLGHFASDCDQPRVPRGPCRNCGI--EGHFAVDCDQPKVPRGPCRN 643
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 27.5 bits (58), Expect = 4.2
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +2
Query: 350 KSCYNCNKTGHIARKC 397
++C+ CN+ GHIA C
Sbjct: 675 RACFRCNEMGHIAWNC 690
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 27.5 bits (58), Expect = 4.2
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +2
Query: 350 KSCYNCNKTGHIARKC 397
++C+ CN+ GHIA C
Sbjct: 578 RACFRCNEMGHIAWNC 593
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 27.5 bits (58), Expect = 4.2
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +2
Query: 350 KSCYNCNKTGHIARKC 397
++C+ CN+ GHIA C
Sbjct: 589 RACFRCNEMGHIAWNC 604
>AC084197-38|AAU87807.1| 186|Caenorhabditis elegans Hypothetical
protein Y73B6BL.43 protein.
Length = 186
Score = 27.5 bits (58), Expect = 4.2
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = -1
Query: 309 CRYICSNGQP--VPCSPSQSACAVALEALLTLPIETGIPRHHAPLRAFAREMPGP 151
CR I ++ Q +P Q AC++A ++++T +E I RH AF RE GP
Sbjct: 53 CREIVADVQHSRMPRHMEQEACSLAAKSIMTYHLEHDIARHLK--MAFDREY-GP 104
>Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical
protein ZK1067.1 protein.
Length = 1323
Score = 27.1 bits (57), Expect = 5.5
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -1
Query: 354 DFSSGICAKSRAMCPCRYICSNGQPVPC 271
D ++ +C K C Y C+NGQ C
Sbjct: 744 DTNNTVCKKCHHECDQNYHCANGQSTGC 771
>X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase
protein.
Length = 1323
Score = 27.1 bits (57), Expect = 5.5
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -1
Query: 354 DFSSGICAKSRAMCPCRYICSNGQPVPC 271
D ++ +C K C Y C+NGQ C
Sbjct: 744 DTNNTVCKKCHHECDQNYHCANGQSTGC 771
>D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosine
kinase protein.
Length = 1374
Score = 27.1 bits (57), Expect = 5.5
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -1
Query: 354 DFSSGICAKSRAMCPCRYICSNGQPVPC 271
D ++ +C K C Y C+NGQ C
Sbjct: 795 DTNNTVCKKCHHECDQNYHCANGQSTGC 822
>AF045646-4|AAK29837.2| 295|Caenorhabditis elegans Hypothetical
protein F56B3.2b protein.
Length = 295
Score = 27.1 bits (57), Expect = 5.5
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -1
Query: 336 CAKSRAMCPCRYICSNGQPVPC-SPSQSACAVALEALLTLPIETG 205
C + R MC C + NG+ V +P + A A + +PI G
Sbjct: 228 CYRGRCMCRCGFAAKNGKCVEIPAPPTTTSAPAPAIIPGVPINPG 272
>AF045646-3|AAK29836.2| 432|Caenorhabditis elegans Hypothetical
protein F56B3.2a protein.
Length = 432
Score = 27.1 bits (57), Expect = 5.5
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -1
Query: 336 CAKSRAMCPCRYICSNGQPVPC-SPSQSACAVALEALLTLPIETG 205
C + R MC C + NG+ V +P + A A + +PI G
Sbjct: 365 CYRGRCMCRCGFAAKNGKCVEIPAPPTTTSAPAPAIIPGVPINPG 409
>Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical
protein F02E9.2b protein.
Length = 196
Score = 26.6 bits (56), Expect = 7.3
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +2
Query: 344 DEKSCYNCNKTGHIARKCSDGRR 412
D K CY C H++ C + RR
Sbjct: 133 DAKVCYTCGSEEHVSSICPERRR 155
>Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical
protein F02E9.2a protein.
Length = 227
Score = 26.6 bits (56), Expect = 7.3
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +2
Query: 344 DEKSCYNCNKTGHIARKCSDGRR 412
D K CY C H++ C + RR
Sbjct: 164 DAKVCYTCGSEEHVSSICPERRR 186
>U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein.
Length = 227
Score = 26.6 bits (56), Expect = 7.3
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +2
Query: 344 DEKSCYNCNKTGHIARKCSDGRR 412
D K CY C H++ C + RR
Sbjct: 164 DAKVCYTCGSEEHVSSICPERRR 186
>U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein.
Length = 227
Score = 26.6 bits (56), Expect = 7.3
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +2
Query: 344 DEKSCYNCNKTGHIARKCSDGRR 412
D K CY C H++ C + RR
Sbjct: 164 DAKVCYTCGSEEHVSSICPERRR 186
>Z84574-8|CAE54891.1| 921|Caenorhabditis elegans Hypothetical
protein F33E2.2b protein.
Length = 921
Score = 26.2 bits (55), Expect = 9.7
Identities = 18/69 (26%), Positives = 28/69 (40%)
Frame = -1
Query: 342 GICAKSRAMCPCRYICSNGQPVPCSPSQSACAVALEALLTLPIETGIPRHHAPLRAFARE 163
G+C+KS C CS GQ S++ L A I G+ H + R+
Sbjct: 188 GVCSKSPCYCIVMEYCSKGQLCTVLKSRNTITRELFAQWVKEIADGMHYLHQN-KVIHRD 246
Query: 162 MPGPVALVA 136
+ P L++
Sbjct: 247 LKSPNILIS 255
>Z84574-7|CAB06544.3| 928|Caenorhabditis elegans Hypothetical
protein F33E2.2a protein.
Length = 928
Score = 26.2 bits (55), Expect = 9.7
Identities = 18/69 (26%), Positives = 28/69 (40%)
Frame = -1
Query: 342 GICAKSRAMCPCRYICSNGQPVPCSPSQSACAVALEALLTLPIETGIPRHHAPLRAFARE 163
G+C+KS C CS GQ S++ L A I G+ H + R+
Sbjct: 188 GVCSKSPCYCIVMEYCSKGQLCTVLKSRNTITRELFAQWVKEIADGMHYLHQN-KVIHRD 246
Query: 162 MPGPVALVA 136
+ P L++
Sbjct: 247 LKSPNILIS 255
>Z84574-1|CAE54890.1| 577|Caenorhabditis elegans Hypothetical
protein F33E2.2c protein.
Length = 577
Score = 26.2 bits (55), Expect = 9.7
Identities = 18/69 (26%), Positives = 28/69 (40%)
Frame = -1
Query: 342 GICAKSRAMCPCRYICSNGQPVPCSPSQSACAVALEALLTLPIETGIPRHHAPLRAFARE 163
G+C+KS C CS GQ S++ L A I G+ H + R+
Sbjct: 188 GVCSKSPCYCIVMEYCSKGQLCTVLKSRNTITRELFAQWVKEIADGMHYLHQN-KVIHRD 246
Query: 162 MPGPVALVA 136
+ P L++
Sbjct: 247 LKSPNILIS 255
>Z49068-2|CAA88855.1| 389|Caenorhabditis elegans Hypothetical
protein K01C8.2 protein.
Length = 389
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Frame = -1
Query: 327 SRAMCPCRY---ICSNGQPVPCSPSQSAC 250
S + CP + + SNG V CSPS S C
Sbjct: 128 STSSCPSDFTPAVGSNGGTVSCSPSVSTC 156
>U21324-13|AAA62558.1| 357|Caenorhabditis elegans Hypothetical
protein C35D10.2 protein.
Length = 357
Score = 26.2 bits (55), Expect = 9.7
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 336 RSRTRSHVTTATRRATSHGSV 398
RSRTRS A R+++HGSV
Sbjct: 10 RSRTRSRSRGAFNRSSNHGSV 30
>AL031630-5|CAA20985.1| 915|Caenorhabditis elegans Hypothetical
protein Y38H6C.5 protein.
Length = 915
Score = 26.2 bits (55), Expect = 9.7
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +2
Query: 353 SCYNCNKTGHIARKC 397
+CY C K GH A +C
Sbjct: 410 NCYYCGKRGHTANEC 424
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = +1
Query: 136 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGTLR 264
CY C + GH A EC + D N +R+ + + LR
Sbjct: 411 CYYCGKRGHTANECRR---KKSDESQNGERQDPSQSEQIAALR 450
>AL023844-8|CAA19534.1| 396|Caenorhabditis elegans Hypothetical
protein Y48A6B.13 protein.
Length = 396
Score = 26.2 bits (55), Expect = 9.7
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = -2
Query: 407 SRRNTSVRC-GPSCCSCNMTSRPGSVRNRALCARAVTSVATVSLFLAVPRKVPVRLHLKH 231
+++ +SV+ G S S + ++ P + RN ARA +++ S P +H
Sbjct: 102 NKKQSSVQDNGSSSSSASSSASPSNRRNTLPDARASSAIGYASSSSTATPATPQSQQQQH 161
Query: 230 FSRCRLKPESRDTT 189
F R R P + TT
Sbjct: 162 FQRNR--PAAHSTT 173
>AL022593-4|CAE54889.1| 921|Caenorhabditis elegans Hypothetical
protein F33E2.2b protein.
Length = 921
Score = 26.2 bits (55), Expect = 9.7
Identities = 18/69 (26%), Positives = 28/69 (40%)
Frame = -1
Query: 342 GICAKSRAMCPCRYICSNGQPVPCSPSQSACAVALEALLTLPIETGIPRHHAPLRAFARE 163
G+C+KS C CS GQ S++ L A I G+ H + R+
Sbjct: 188 GVCSKSPCYCIVMEYCSKGQLCTVLKSRNTITRELFAQWVKEIADGMHYLHQN-KVIHRD 246
Query: 162 MPGPVALVA 136
+ P L++
Sbjct: 247 LKSPNILIS 255
>AL022593-3|CAA18635.3| 928|Caenorhabditis elegans Hypothetical
protein F33E2.2a protein.
Length = 928
Score = 26.2 bits (55), Expect = 9.7
Identities = 18/69 (26%), Positives = 28/69 (40%)
Frame = -1
Query: 342 GICAKSRAMCPCRYICSNGQPVPCSPSQSACAVALEALLTLPIETGIPRHHAPLRAFARE 163
G+C+KS C CS GQ S++ L A I G+ H + R+
Sbjct: 188 GVCSKSPCYCIVMEYCSKGQLCTVLKSRNTITRELFAQWVKEIADGMHYLHQN-KVIHRD 246
Query: 162 MPGPVALVA 136
+ P L++
Sbjct: 247 LKSPNILIS 255
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,669,843
Number of Sequences: 27780
Number of extensions: 195542
Number of successful extensions: 845
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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