Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0915X.Seq
         (423 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   2.5  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   3.3  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   3.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   3.3  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   7.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.5  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +1

Query: 100 EFSKPIAMSSSVCYKCNRTGHFAR 171
           +  KP+    +V Y   ++G+F+R
Sbjct: 165 DIGKPVVAEETVDYMLEKSGNFSR 188


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -2

Query: 308 AVTSVATVSLFLAVPRKVPVRLHLKHFSRCRLKPESRDTTPPC 180
           AV  +A V L   +   VP+ L L   +   +  +S++  P C
Sbjct: 142 AVAGIAVVWLLAGLISFVPISLGLHRANEPVVLDDSKEEHPTC 184


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 5/16 (31%), Positives = 10/16 (62%)
 Frame = -1

Query: 357 HDFSSGICAKSRAMCP 310
           H+    +C+K + +CP
Sbjct: 345 HNLQKDVCSKLKGLCP 360


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 5/16 (31%), Positives = 10/16 (62%)
 Frame = -1

Query: 357 HDFSSGICAKSRAMCP 310
           H+    +C+K + +CP
Sbjct: 435 HNLQKDVCSKLKGLCP 450


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = -1

Query: 216 IETGIPRHHAPLRAFAREMPGP 151
           +  G+P HH       ++MP P
Sbjct: 57  LRQGVPGHHYGAAGSQQDMPYP 78


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 128 QAFATSATGPGI 163
           Q FAT+A+ PG+
Sbjct: 909 QGFATAASSPGL 920



 Score = 20.2 bits (40), Expect = 10.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 240  LEALLTLPIETGIPR 196
            L+ L+   +ETGIPR
Sbjct: 1284 LDNLIRSSLETGIPR 1298


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,489
Number of Sequences: 438
Number of extensions: 1938
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10873896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)