Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0914.Seq
         (738 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0544 - 23768808-23768910,23769005-23769030,23769379-237694...    32   0.41 
11_08_0079 + 28189782-28189907,28190445-28190553,28190876-281909...    31   0.95 
03_06_0189 + 32214702-32215154                                         29   2.9  
02_04_0451 + 23021139-23021269,23021366-23021498,23021594-230217...    29   3.9  
07_01_0130 - 963856-965454                                             28   6.7  
10_02_0144 + 5815403-5815520,5815551-5816314                           28   8.9  

>02_04_0544 -
           23768808-23768910,23769005-23769030,23769379-23769497,
           23769542-23769668,23769842-23769905,23769981-23770095,
           23770867-23771101,23771196-23771382,23771948-23772305,
           23772432-23772465
          Length = 455

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
 Frame = -1

Query: 702 PTTPTAVKPPRVGPKTSLNHSIGSSDG-RCVQRAGT*STRAYDSRLLGIPR---LWGIIA 535
           P  PT   PP   PKT+ + +  SSDG R +    + S   YD R L + R   L G++A
Sbjct: 24  PPYPTGSAPPVRLPKTACSATYFSSDGSRLLATVASASATVYDCRTLSVVRSFELPGLLA 83

Query: 534 NP-NPQHEGVQRVARASRP 481
              +P    +Q   ++S P
Sbjct: 84  AALSPAGTFLQTFQKSSSP 102


>11_08_0079 +
           28189782-28189907,28190445-28190553,28190876-28190958,
           28191500-28191562,28191658-28192854,28193247-28193310,
           28193338-28193426,28194404-28194463,28195442-28195547,
           28196057-28196069,28196940-28197111
          Length = 693

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = +3

Query: 489 KPGQPAELLRAGDWGLQLSPINEEFLVSASHKLALITSLPFVHTARRYYRLNDLVRSSD 665
           KPGQ   + R G+ GL  + I +E  +S +HK   + SL   H     Y + +L   +D
Sbjct: 283 KPGQRLIIARGGEGGLGNACILKEMWLSKAHKEEEMASLSTGHPGTETYLILELKSIAD 341


>03_06_0189 + 32214702-32215154
          Length = 150

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -1

Query: 132 AAGSTPGGALPSIPLSFSFATILPPESKIFGFPEAA 25
           AA + P  ALP +P   +  T LPP   I   P+AA
Sbjct: 30  AAAAAPPAALPVLPAVPALPTTLPPMPAIPAVPQAA 65


>02_04_0451 +
           23021139-23021269,23021366-23021498,23021594-23021789,
           23023376-23023737,23024049-23024363
          Length = 378

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
 Frame = -1

Query: 249 LHQLRTAMHHHP--PNQERAVNLSILPVSGPGEISRVESN*AAGSTPGGALPSIPLSFSF 76
           LH L T     P  P +  +   +ILP   PG  S + S    G TP G +   P  F F
Sbjct: 313 LHYLSTLSPPEPLAPPRTFSSENAILPPESPGTSSLMASRGDLGDTPKGKMEDKPRGFFF 372


>07_01_0130 - 963856-965454
          Length = 532

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -1

Query: 246 HQLRTAMHHHPPNQERAVNLSILPVSGPGEISR 148
           H +   +   PPN     NL +LP+ GP ++ +
Sbjct: 195 HIINFLLRPEPPNTLSVDNLGVLPIIGPAKVGK 227


>10_02_0144 + 5815403-5815520,5815551-5816314
          Length = 293

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
 Frame = +3

Query: 213 VGGGAWPFLVGGAIVWLIPVTNETLAC*IGVV---I*VCAASCRATH*RRIKILLRGTGV 383
           +G GAW   V    VW  P T++ + C I      +  C A       R I+++ RG  V
Sbjct: 31  MGDGAWKIEVHTVGVWPRPSTSK-ICCHIFPACGPVKECGAQTGHVFSRSIEVVRRGGRV 89

Query: 384 FEPHEIEQ 407
             PH + +
Sbjct: 90  LAPHRLRR 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,287,489
Number of Sequences: 37544
Number of extensions: 553062
Number of successful extensions: 1498
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1498
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)