Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0913.Seq
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    29   0.80 
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    28   1.1  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    28   1.4  
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   1.8  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    27   3.2  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    26   5.6  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    26   5.6  
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    25   9.8  

>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +3

Query: 21  ALALQRNSSLQLDYATVNPYTFAEPTSPHIISAQEGRPIESLVMSA 158
           ++ LQ+N +   D  T+ P TF++PT+P   SAQ   P  S   +A
Sbjct: 67  SINLQKNLTPNGDSNTLTPDTFSDPTAPS--SAQSVPPTSSAETTA 110


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -2

Query: 253 SAKVKVSESGVNQPPAPSTNTQSACCS-SARNPA 155
           S++V VS      PP+PS++T+SA  S S   PA
Sbjct: 520 SSRVSVSNLLAGSPPSPSSSTKSASSSYSTTTPA 553


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = -2

Query: 448 RGNHAGERGHIFSVTFSRRRNIVRHPTRQSQSGVLYYLCSQHRVINTAEFHTNYQYHRQL 269
           R N++   G    V FS    I       S + + +YL  + RV++  EF  NY    QL
Sbjct: 222 RNNNSSRFGKFIKVEFSLSGEI-------SNAAIEWYLLEKSRVVHQNEFERNYHVFYQL 274


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 450 RCWERSPGLQKIQKMRQPERHK 515
           R W R P LQ++  +R+ +RH+
Sbjct: 40  RLWNRFPSLQRVLGLRRAKRHR 61


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 15/61 (24%), Positives = 27/61 (44%)
 Frame = -2

Query: 415 FSVTFSRRRNIVRHPTRQSQSGVLYYLCSQHRVINTAEFHTNYQYHRQLFLCYPSAKVKV 236
           F+V F     + +HP   ++  V   L S++++    E    Y++  +L L   S   K 
Sbjct: 389 FNVDFGSSLKVTKHPLSLTRFNVRKLLASENKLAVLTELGEVYEFDMKLLLDRDSTSSKN 448

Query: 235 S 233
           S
Sbjct: 449 S 449


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -3

Query: 534 WLQQGKVYVFPVAAFSGFSASQGISPSSGAGIMRVSVV 421
           W QQ ++YV P     GF  ++  S     G+   ++V
Sbjct: 643 WPQQREIYVLPGETALGFYTAENTSDHDIVGVATYNIV 680


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -3

Query: 534 WLQQGKVYVFPVAAFSGFSASQGISPSSGAGIMRVSVV 421
           W QQ ++YV P     GF  ++  S     G+   ++V
Sbjct: 643 WPQQREIYVLPGETALGFYTAENTSDHDIVGVATYNIV 680


>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +2

Query: 56  GLRNSKSLHLRRTHFAAHHQRARGQTDRIIGNERRITRA 172
           GL +S+++     HF     ++ G+T++  G  R +T+A
Sbjct: 340 GLVSSRNVEDILNHFQKELTKSNGETEKDDGRRRALTKA 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,859,527
Number of Sequences: 5004
Number of extensions: 58934
Number of successful extensions: 142
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)