Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0913.Seq
(665 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0901 - 8873905-8874076,8874674-8874786,8875388-8875522,887... 31 1.1
07_01_0753 - 5799733-5799741,5799938-5800642 30 1.4
06_03_0395 - 20354713-20355570 30 1.9
03_01_0619 + 4556665-4557132 29 3.3
04_04_0551 + 26191629-26192174 29 4.4
01_06_0891 - 32752825-32752932,32753085-32753176,32753293-327534... 29 4.4
07_01_0724 + 5529642-5531141 28 5.8
04_03_0205 + 12649724-12650191,12651493-12652025,12652114-126522... 28 7.7
01_06_0276 - 28084746-28085003,28085103-28085357,28085531-280857... 28 7.7
>08_01_0901 -
8873905-8874076,8874674-8874786,8875388-8875522,
8875661-8875792,8876136-8876301,8877154-8877248,
8878983-8879104,8879283-8879403,8879556-8879633,
8879730-8879991,8880196-8880366,8881070-8881710
Length = 735
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Frame = +3
Query: 78 YTFAEPTSPHIISAQEGRPIESLVMSAGLRALEQQAD-----WVLVEGAGGWFTP 227
Y + EP SPH+ + +EG P+E + + + D W ++E AGG +P
Sbjct: 148 YAWREPVSPHLAAEREGMPVEDEEVRWLVDRWLAEEDGGGEVWKVLETAGGVASP 202
>07_01_0753 - 5799733-5799741,5799938-5800642
Length = 237
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Frame = -2
Query: 268 FLCYPSAKV------KVSESGVNQPPAPSTNTQSACCSSARNPALI 149
FL YPSA V ++ VN PP PS + A RNP L+
Sbjct: 102 FLLYPSAPVARVEGLRLDRFRVNPPPLPSVDLHLALRLRVRNPGLV 147
>06_03_0395 - 20354713-20355570
Length = 285
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Frame = -2
Query: 256 PSAKVKVSESGVN-QPPAPSTNTQSA----CCSSARNPALITNDSIGLPSCALMMC 104
P A V ++ G QPP P+ A CC R P+ + G PS +L C
Sbjct: 112 PRAAVDAADRGRRRQPPPPTAPPLEAPANGCCRRCRGPSTAVATATGAPSTSLPCC 167
>03_01_0619 + 4556665-4557132
Length = 155
Score = 29.1 bits (62), Expect = 3.3
Identities = 24/69 (34%), Positives = 30/69 (43%)
Frame = +1
Query: 280 DTGSWCETRLY*SRDVDCTGNTTRRTDSGGLGGERCYASGKTSR*IYDHAHPHDSRAAAG 459
DT +C R Y + T N R D G GG A+ +S P +RAAAG
Sbjct: 3 DTARYCSER-YPKAESYGTCNWCLRADQGSDGGGGGAAAASSSM----ARPPTGARAAAG 57
Query: 460 RDPLACRKS 486
DP A +S
Sbjct: 58 GDPAASSRS 66
>04_04_0551 + 26191629-26192174
Length = 181
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 141 SLVMSAGLRALEQQADWVLVEGAGGW 218
SL +S+ L Q++ W GAGGW
Sbjct: 12 SLPLSSPLHGRRQRSSWARATGAGGW 37
>01_06_0891 -
32752825-32752932,32753085-32753176,32753293-32753408,
32754055-32755969,32756037-32756171,32756549-32756870
Length = 895
Score = 28.7 bits (61), Expect = 4.4
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = -2
Query: 460 SQQRRGNHAGERGHIFSVTFSRRRNIVRHPTRQSQSGVLYYLCSQHRVINT-AEFHTNYQ 284
S Q+ G AGE GHI T + +S S ++ S R+ NT A+ T+ +
Sbjct: 44 SPQQSG--AGESGHIIDATVEDAEKMPSQLRTRSDSSARVFMSSPSRIRNTDAQQSTSIR 101
Query: 283 YHRQ 272
H Q
Sbjct: 102 SHGQ 105
>07_01_0724 + 5529642-5531141
Length = 499
Score = 28.3 bits (60), Expect = 5.8
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +3
Query: 177 QQADWVLVEGAGGWFTPLSD 236
++ DWV+V+ A GW P++D
Sbjct: 147 RRPDWVVVDFAHGWLPPIAD 166
>04_03_0205 +
12649724-12650191,12651493-12652025,12652114-12652239,
12652625-12652724,12652880-12652899,12653035-12653137,
12653213-12653351,12653448-12653662,12653772-12654320
Length = 750
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +3
Query: 102 PHI--ISAQEGRPIESLVMSAGLRALEQQADWVLVEGAGG 215
PHI I+ Q +S+ +S G E +W L G+GG
Sbjct: 297 PHIAGIAGQSTHGAQSVALSGGYLDDEDHGEWFLYTGSGG 336
>01_06_0276 - 28084746-28085003,28085103-28085357,28085531-28085798,
28085948-28086253,28086369-28086643,28087034-28087252,
28087486-28089015,28089236-28089397,28089512-28089666,
28090195-28091064,28091363-28091832,28091917-28091981,
28092105-28092448,28092531-28092710,28092817-28092920,
28093053-28093162,28093648-28093744,28094138-28094238,
28094324-28094476,28094561-28094674,28094795-28094884,
28094960-28095307
Length = 2157
Score = 27.9 bits (59), Expect = 7.7
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = -2
Query: 322 RVINTAEFHTNYQYHRQLFLCY--PSAKVKV-SESGVNQPPAPSTNTQSACCSSARNP 158
RV N ++ Y R+ + Y P+ +VK E + P P NTQSA C P
Sbjct: 1644 RVSNAKKYRGFISYERES-ISYRDPNERVKDWKEVAIESVPGPLLNTQSARCMDCGTP 1700
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,431,563
Number of Sequences: 37544
Number of extensions: 476931
Number of successful extensions: 1466
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1465
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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