Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0913.Seq
         (665 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-4|ABJ99065.1|   78|Caenorhabditis elegans Hypothetical ...    30   1.3  
Z82069-7|CAB04907.2| 1792|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AL132902-15|CAC14425.1| 1792|Caenorhabditis elegans Hypothetical...    29   2.2  
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    29   3.9  
AF045645-3|AAC02610.2|  193|Caenorhabditis elegans Hypothetical ...    28   5.2  
Z69885-2|CAC35825.1|  469|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z69885-1|CAC35824.1|  467|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AC006777-4|AAK72310.1|  333|Caenorhabditis elegans Hypothetical ...    28   6.8  

>AF003139-4|ABJ99065.1|   78|Caenorhabditis elegans Hypothetical
           protein F53G12.13 protein.
          Length = 78

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = -1

Query: 629 SKIFFVIILEFNWLNCSQSKTRSRSQFNQIQNGYNKARFMSFRLPHFLDFL 477
           S  +F  + E +WL+C      ++ ++  +QN     +FM  R P+ + F+
Sbjct: 11  SNKYFFDVNEPSWLDCKAFAVLAQFKYTPLQNEARVKQFMKDRTPNLMTFV 61


>Z82069-7|CAB04907.2| 1792|Caenorhabditis elegans Hypothetical
           protein W04A8.7 protein.
          Length = 1792

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 402 NVTLNI*PRSPA*FPRRCWERSPGLQKIQKMRQPERHKP 518
           N+  +  P  P+ F  R W R+P  ++I +  QP R +P
Sbjct: 521 NIATHFFPTHPSAFRLRYWHRTPFTRRIVRHWQPMRFQP 559


>AL132902-15|CAC14425.1| 1792|Caenorhabditis elegans Hypothetical
           protein W04A8.7 protein.
          Length = 1792

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 402 NVTLNI*PRSPA*FPRRCWERSPGLQKIQKMRQPERHKP 518
           N+  +  P  P+ F  R W R+P  ++I +  QP R +P
Sbjct: 521 NIATHFFPTHPSAFRLRYWHRTPFTRRIVRHWQPMRFQP 559


>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
           protein F21E9.1 protein.
          Length = 1170

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 1/105 (0%)
 Frame = -2

Query: 391 RNIVRHPTRQSQSGV-LYYLCSQHRVINTAEFHTNYQYHRQLFLCYPSAKVKVSESGVNQ 215
           RN   H ++ S  GV + +  S +  +    F T+Y  HR   L +     + + S  + 
Sbjct: 376 RNPELH-SKVSGGGVAVMHKSSLNITLRDINFETHYPKHRCEILAFDIHNAEPASSA-SS 433

Query: 214 PPAPSTNTQSACCSSARNPALITNDSIGLPSCALMMCGEVGSAKV 80
           P +     +  CCS + N ALI +    +P    ++ G++   ++
Sbjct: 434 PLSIFLIYRPPCCSVSENAALIAHLESYIPLSRTILAGDLNFPQI 478


>AF045645-3|AAC02610.2|  193|Caenorhabditis elegans Hypothetical
           protein K02D7.2 protein.
          Length = 193

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 232 ESGVNQPPAPSTNTQSACCSSARNPALI 149
           E  ++  PAPS+++ SA CSS  N  L+
Sbjct: 15  EDLISPDPAPSSSSSSASCSSLDNQKLV 42


>Z69885-2|CAC35825.1|  469|Caenorhabditis elegans Hypothetical
           protein T04C10.2b protein.
          Length = 469

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -2

Query: 259 YPSAKVKVSESGVNQPPAPSTNTQSACCSSARNPALIT 146
           +  A+VKV E+  N P  PST   S       NP   T
Sbjct: 17  FSDAQVKVREATSNDPWGPSTALMSEIADLTHNPMAFT 54


>Z69885-1|CAC35824.1|  467|Caenorhabditis elegans Hypothetical
           protein T04C10.2a protein.
          Length = 467

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -2

Query: 259 YPSAKVKVSESGVNQPPAPSTNTQSACCSSARNPALIT 146
           +  A+VKV E+  N P  PST   S       NP   T
Sbjct: 17  FSDAQVKVREATSNDPWGPSTALMSEIADLTHNPMAFT 54


>AC006777-4|AAK72310.1|  333|Caenorhabditis elegans Hypothetical
           protein Y46H3D.7 protein.
          Length = 333

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = -3

Query: 393 GVTSFATQPARVSPACCITCAVNIA*LIQPSFTPTTSITGSC 268
           GV   +         CC  CA     L+  S TPT   +G+C
Sbjct: 9   GVCEHSADVFHFGAICCEACAAFFRRLVSRSKTPTAICSGNC 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,352,504
Number of Sequences: 27780
Number of extensions: 361592
Number of successful extensions: 1054
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)