Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0911.Seq
         (704 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0284 + 24133397-24133483,24133843-24133979,24134311-241345...    28   6.3  
12_02_0912 - 24238659-24238897,24239353-24239462,24239548-242397...    28   8.3  
12_01_0386 + 3023431-3023522,3023951-3024097,3024227-3024308,302...    28   8.3  
03_02_0371 + 7858170-7859624                                           28   8.3  
01_06_0906 + 32886693-32886919,32887589-32887708,32887978-328881...    28   8.3  

>04_04_0284 +
           24133397-24133483,24133843-24133979,24134311-24134599,
           24134723-24134829,24134905-24135052,24135260-24135458,
           24135545-24135785,24135888-24135984,24136413-24136492,
           24136533-24136551
          Length = 467

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -2

Query: 607 LLSPAFLGEQKQEGKMPQKRE*GRHGNVEYSYSPFNILLKHLSGLLSHE 461
           L  P    ++KQEGK P  R      ++E  ++PF  LL+HL     H+
Sbjct: 222 LSRPTSFNKEKQEGKKPPARVTSFKNSIE-DFNPFK-LLEHLFVECKHQ 268


>12_02_0912 -
           24238659-24238897,24239353-24239462,24239548-24239741,
           24239839-24239907,24240096-24240282,24240683-24240969,
           24241593-24241880
          Length = 457

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/67 (22%), Positives = 35/67 (52%)
 Frame = +1

Query: 448 KYVSAHETITLINASIIY*KESMSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQF 627
           K +S  + + L+  ++     SM+ +HF ++++ + AA  +P+ AH      +    D+ 
Sbjct: 337 KDISYRDLVQLLGGAVAG-LHSMTDEHFGISVVEYMAAGAIPI-AHKSAGPMMDIVLDED 394

Query: 628 GARMGYI 648
           G + G++
Sbjct: 395 GQQTGFL 401


>12_01_0386 +
           3023431-3023522,3023951-3024097,3024227-3024308,
           3024801-3024842,3024930-3024989,3025430-3027109,
           3027239-3027340,3027461-3027604,3027704-3027829,
           3027933-3028100
          Length = 880

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -2

Query: 535 HGNVEYSYSPFNILLKHLS 479
           HGN+E S  P N+LLK LS
Sbjct: 288 HGNMEESSGPRNVLLKSLS 306


>03_02_0371 + 7858170-7859624
          Length = 484

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -2

Query: 598 PAFLGEQKQEGKMPQKRE*GRHGN 527
           P F G+QKQ G    K   GR GN
Sbjct: 456 PGFAGKQKQHGSSNSKSSRGRSGN 479


>01_06_0906 +
           32886693-32886919,32887589-32887708,32887978-32888101,
           32888224-32888361,32888492-32888701,32889085-32889232,
           32890452-32890801,32890909-32890963,32891087-32891382,
           32891480-32891531,32891740-32891947,32892064-32892446,
           32894102-32894538,32895452-32895643
          Length = 979

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/57 (28%), Positives = 23/57 (40%)
 Frame = -3

Query: 702 TFFGAKTLKDLTAVEIQFDVPHSCTKLIFSIFYFHQRFWVSKNRKAKCRKKGNKGDT 532
           TF     L D    E    +P  C+++IF +  F Q       R  +CR+    G T
Sbjct: 178 TFLSVNKLVDAVITEDSDLIPFGCSRIIFKMDKFGQGVEFHITRLQRCRELDLNGFT 234


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,490,568
Number of Sequences: 37544
Number of extensions: 356352
Number of successful extensions: 859
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)