Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0909.Seq
(693 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0938 - 26126669-26127115,26127197-26127619,26127727-26128047 32 0.50
02_05_0255 - 27184306-27184914,27185009-27185272 31 0.87
07_03_1721 - 29023979-29025295 29 3.5
05_05_0033 + 21737075-21737721,21737819-21738134,21738463-21739722 29 3.5
01_05_0439 - 22159425-22159520,22160137-22160345,22161028-221610... 29 3.5
08_01_0077 + 546473-546512,546739-547013,547772-547885,548002-55... 29 4.6
04_03_0819 + 20018496-20019487,20019587-20019721,20019834-200199... 29 4.6
05_02_0024 - 5702501-5702664,5703219-5703393,5703716-5704099,570... 28 6.1
>06_03_0938 - 26126669-26127115,26127197-26127619,26127727-26128047
Length = 396
Score = 31.9 bits (69), Expect = 0.50
Identities = 20/56 (35%), Positives = 26/56 (46%)
Frame = -1
Query: 615 SEPAKSFRQTERSAAALGPQGRLAAEDGAGERVTVGLTVRDDGRFVGVGTMFSGSV 448
S A RQ + AAA GP +AA E++ LT RD G + T SG +
Sbjct: 334 SAAAAVVRQQQEQAAAAGPSTEVAARKNLAEQMAATLT-RDPGFKAALVTALSGRI 388
>02_05_0255 - 27184306-27184914,27185009-27185272
Length = 290
Score = 31.1 bits (67), Expect = 0.87
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = -2
Query: 290 ASVCTACPTAAPAHLDRHRSHHLRTILYVQSM 195
ASV TA PT APA + H HH T + V+ +
Sbjct: 146 ASVVTAAPTPAPAPVVTHGDHHHDTAVPVEKI 177
>07_03_1721 - 29023979-29025295
Length = 438
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 503 PSGTTAASWASGPCSVAPSTFTSPSVCS 420
P+G ++ W CSV+ S+ TS S CS
Sbjct: 315 PNGAWSSPWIQPNCSVSASSPTSTSTCS 342
>05_05_0033 + 21737075-21737721,21737819-21738134,21738463-21739722
Length = 740
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Frame = +1
Query: 421 LQTEGDVNVDGA---TEHGPDAHEAAVVPDGQPDSDSFTS 531
L TEGD D A TE G + + V D QPD D S
Sbjct: 217 LHTEGDEGKDNAMESTEEGHERSDCTVCTDEQPDIDGEVS 256
>01_05_0439 - 22159425-22159520,22160137-22160345,22161028-22161066,
22161196-22161356,22161447-22161518,22162002-22162183,
22162580-22162703,22164196-22164299,22165526-22165725,
22165838-22166069,22166156-22166239,22166329-22166386,
22166724-22166771,22167924-22168081,22168451-22168501,
22168585-22168658,22168760-22168835,22169685-22169729,
22169833-22169899,22169978-22170095,22170580-22170775,
22171551-22171640,22171985-22172039,22172755-22172975,
22173362-22173454,22173608-22173721,22173918-22173981,
22174081-22174181,22174306-22174447,22174528-22174729,
22174883-22174976,22176172-22176348
Length = 1248
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 6/48 (12%)
Frame = -2
Query: 686 TSTSSDVAGWP--NEDKEDAHRMFTIANPLSR----SGKQKGLLQLWD 561
++T S VAGW ++ A + +A+ L R SG + GLL+LWD
Sbjct: 1196 SNTGSKVAGWQLYRTPQKTAAMVRCVASDLDRKRICSGGRNGLLRLWD 1243
>08_01_0077 +
546473-546512,546739-547013,547772-547885,548002-550245
Length = 890
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -2
Query: 584 KGLLQLWDPKDGSLRKTVLVNESLSG*PSGTTAASWASG 468
K L++L DP G + K V V +L+ P G TA A G
Sbjct: 722 KYLVELMDPAAGMVDKAVAVLANLATIPEGRTAIGQARG 760
>04_03_0819 +
20018496-20019487,20019587-20019721,20019834-20019978,
20020135-20020416,20020649-20020910,20021028-20021224,
20021315-20021425,20022341-20022392,20022442-20022584,
20023121-20023210,20023300-20023800,20024108-20024176,
20024866-20025011,20025475-20025530,20026140-20026286,
20027405-20027530,20027608-20027876,20028026-20028127
Length = 1274
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -1
Query: 429 SLQRVLHVRSAHRMFVTGVQ 370
S +++LH +SAHRMF+ VQ
Sbjct: 518 SRKQILHTKSAHRMFLGSVQ 537
>05_02_0024 -
5702501-5702664,5703219-5703393,5703716-5704099,
5705787-5705864,5706015-5706140
Length = 308
Score = 28.3 bits (60), Expect = 6.1
Identities = 22/78 (28%), Positives = 30/78 (38%)
Frame = -1
Query: 591 QTERSAAALGPQGRLAAEDGAGERVTVGLTVRDDGRFVGVGTMFSGSVDIYIAFSLQRVL 412
QT +AAA P AA + G++ V DDG F T D+ + R
Sbjct: 149 QTRSAAAAEAPVSSGAAMEVQGQQQQVLKLQADDGHFSSAPTKKRLHQDVVAQVKVDRGH 208
Query: 411 HVRSAHRMFVTGVQFLPV 358
H A R ++ PV
Sbjct: 209 HCMPAQRQVNFNLKVTPV 226
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,463,987
Number of Sequences: 37544
Number of extensions: 277311
Number of successful extensions: 1021
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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