Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0909.Seq
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75711-2|CAB00033.2|  425|Caenorhabditis elegans Hypothetical pr...    45   6e-05
Z81571-10|CAB04621.2|  341|Caenorhabditis elegans Hypothetical p...    29   3.2  
Z81571-1|CAB04610.1|  341|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z81504-5|CAB04120.2|  341|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U41263-6|AAC24432.1|  338|Caenorhabditis elegans Serpentine rece...    28   7.3  
AF039040-2|AAO91670.1|  615|Caenorhabditis elegans Hypothetical ...    28   7.3  
AF039040-1|AAB94184.1|  553|Caenorhabditis elegans Hypothetical ...    28   7.3  
AF000198-7|AAB53052.1|  418|Caenorhabditis elegans Collagen prot...    28   7.3  
Z79694-1|CAB01959.1|  303|Caenorhabditis elegans Hypothetical pr...    27   9.6  
U39666-2|AAA80411.2|  835|Caenorhabditis elegans Oligopeptide tr...    27   9.6  
U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    27   9.6  
AF000418-1|AAC39119.1|  796|Caenorhabditis elegans low-affinity ...    27   9.6  

>Z75711-2|CAB00033.2|  425|Caenorhabditis elegans Hypothetical
           protein K02B12.3 protein.
          Length = 425

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 9/86 (10%)
 Frame = -1

Query: 507 LTVRDDGRFVGVGTMFSGSVDIYIAFSLQRVLHVRSAHRMFVTGVQFL---------PVR 355
           L V D G F  VGTM SGSV ++     +R+     +H +FVTG++F+          ++
Sbjct: 307 LAVSDCGNFTAVGTM-SGSVLVFDTHECRRLYFSPESHGLFVTGIEFVSRTSPSICEDIQ 365

Query: 354 GYGPAVASRSEAALLSISVDNCLCVH 277
              P +AS  ++A+++++ D  + +H
Sbjct: 366 SETPGIASGFQSAVVTLAADKTMQLH 391


>Z81571-10|CAB04621.2|  341|Caenorhabditis elegans Hypothetical
           protein M01G12.13 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = -3

Query: 247 WIAIVLI--IFVLFCTFSLCSYLGI 179
           W+A+V I   FVLF  FS C +LG+
Sbjct: 195 WLAVVGIGAFFVLFMVFSYCIFLGV 219


>Z81571-1|CAB04610.1|  341|Caenorhabditis elegans Hypothetical
           protein M01G12.1 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = -3

Query: 247 WIAIVLI--IFVLFCTFSLCSYLGI 179
           W+A+V I   FVLF  FS C +LG+
Sbjct: 195 WLAVVGIGAFFVLFMVFSYCIFLGV 219


>Z81504-5|CAB04120.2|  341|Caenorhabditis elegans Hypothetical
           protein M01G12.13 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = -3

Query: 247 WIAIVLI--IFVLFCTFSLCSYLGI 179
           W+A+V I   FVLF  FS C +LG+
Sbjct: 195 WLAVVGIGAFFVLFMVFSYCIFLGV 219


>U41263-6|AAC24432.1|  338|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 26 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = +1

Query: 13  FFCNISHYLINIYTYNMCT*AYYHNNIFIKLTHSLLLHIHLRTNKYFTY*FYINIKYLNM 192
           F C IS  +I+ Y + +       NNIF   T +LL+   + +  + T    + I+ +  
Sbjct: 31  FVCIISIIIISYYFFYLVVKTLIKNNIFSNCTRALLIFCSINSIVHQTTMMEVRIRQIYR 90

Query: 193 NI 198
           +I
Sbjct: 91  SI 92


>AF039040-2|AAO91670.1|  615|Caenorhabditis elegans Hypothetical
           protein T22B11.4b protein.
          Length = 615

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = -3

Query: 274 PALPRLRPIWIAIVLIIFVLFCTFSLCSYLGI*CLYK 164
           P   R+R I IA  LIIF +FC+  LC      C+YK
Sbjct: 486 PDYLRVRNITIA-TLIIFAVFCSLGLC------CIYK 515


>AF039040-1|AAB94184.1|  553|Caenorhabditis elegans Hypothetical
           protein T22B11.4a protein.
          Length = 553

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = -3

Query: 274 PALPRLRPIWIAIVLIIFVLFCTFSLCSYLGI*CLYK 164
           P   R+R I IA  LIIF +FC+  LC      C+YK
Sbjct: 486 PDYLRVRNITIA-TLIIFAVFCSLGLC------CIYK 515


>AF000198-7|AAB53052.1|  418|Caenorhabditis elegans Collagen protein
           50 protein.
          Length = 418

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +1

Query: 466 GPDAHEAAVVPDGQPDSDSFTST 534
           GPD    A  PDGQP +   TST
Sbjct: 210 GPDGQPGAPGPDGQPGAGGTTST 232


>Z79694-1|CAB01959.1|  303|Caenorhabditis elegans Hypothetical
           protein C15A11.1 protein.
          Length = 303

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
 Frame = +1

Query: 373 HARHEHPVRAPHVQHALQTEGDVNVDG-ATEHGPDAHEAAVVPDGQPDSDSFTST 534
           +A  E P  AP         G+    G A   GPD    A  P+GQP +   TST
Sbjct: 125 NAGPEGPSGAPGADGDAAGPGEAGPAGPAGPPGPDGQPGAPGPNGQPGAAGTTST 179


>U39666-2|AAA80411.2|  835|Caenorhabditis elegans Oligopeptide
           transporter protein 2 protein.
          Length = 835

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 520 SFTSTVFRSEPSLGSQSC 573
           +F S +FRS+P LG  SC
Sbjct: 200 TFISPIFRSQPCLGQDSC 217


>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
 Frame = +1

Query: 520 SFTSTVFRSEPSLGSQSCSRPFCLPERLSGFAIVNILC-----ASSL--SSLGQPATSEE 678
           S+   + R  P + + + +RP CLP   S  A+ N LC      S++  SSL  P T  E
Sbjct: 143 SYDFAIMRIHPPVNTSTTARPICLP---SLPAVENRLCVVTGWGSTIEGSSLSAP-TLRE 198

Query: 679 VLVPL 693
           + VPL
Sbjct: 199 IHVPL 203


>AF000418-1|AAC39119.1|  796|Caenorhabditis elegans low-affinity
           peptide transporter protein.
          Length = 796

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 520 SFTSTVFRSEPSLGSQSC 573
           +F S +FRS+P LG  SC
Sbjct: 161 TFISPIFRSQPCLGQDSC 178


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,395,059
Number of Sequences: 27780
Number of extensions: 238041
Number of successful extensions: 881
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)