Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0909.Seq
         (693 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          26   0.30 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      26   0.30 
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               24   1.6  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +1

Query: 472 DAHEAA-VVPDGQPDSDSFTSTVFRSEPSLGSQSCSRPFCLPERL 603
           ++HE+  VVPD  P    +   V   + S   +  S+P+  PERL
Sbjct: 558 NSHESVFVVPDEVPSDVLYNRLVVSEDGSETFKYSSQPYGFPERL 602


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +1

Query: 472 DAHEAA-VVPDGQPDSDSFTSTVFRSEPSLGSQSCSRPFCLPERL 603
           ++HE+  VVPD  P    +   V   + S   +  S+P+  PERL
Sbjct: 558 NSHESVFVVPDEVPSDVLYNRLVVSEDGSETFKYSSQPYGFPERL 602


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 574 CSSGTPRTARCGRRC 530
           C+   P TA C RRC
Sbjct: 28  CNCKAPETALCARRC 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,243
Number of Sequences: 438
Number of extensions: 3107
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)