Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0904.Seq
         (711 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    24   1.4  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       23   1.9  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   4.3  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   4.3  
AM712902-1|CAN84641.1|   95|Tribolium castaneum hypothetical pro...    22   4.3  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    22   5.7  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    22   5.7  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   9.9  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   9.9  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = -3

Query: 607  WLSLVVVSIVVPTGLLLLGLAPCCWFDVVAEASHPGHFG-AEPDF-VLPAPAGNCADA 440
            W+  V  ++ +    +LL L P CW+ +   A +   F  AE +F  L    G  A A
Sbjct: 1536 WIQ-VSNNVKLGQNFVLLDLDPACWYHLRVTAHNNAGFNVAEYEFATLTVTGGTIAPA 1592


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 29 VHQTAIARNNPRKAVRS 79
          +HQT I  NNPR   R+
Sbjct: 46 IHQTVIYHNNPRDPNRA 62


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/22 (36%), Positives = 9/22 (40%)
 Frame = -3

Query: 508 HPGHFGAEPDFVLPAPAGNCAD 443
           HP H  + P  V P P     D
Sbjct: 239 HPPHLSSHPAIVTPGPKQELPD 260


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/22 (36%), Positives = 9/22 (40%)
 Frame = -3

Query: 508 HPGHFGAEPDFVLPAPAGNCAD 443
           HP H  + P  V P P     D
Sbjct: 131 HPPHLSSHPAIVTPGPKQELPD 152


>AM712902-1|CAN84641.1|   95|Tribolium castaneum hypothetical
           protein protein.
          Length = 95

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +2

Query: 143 GVTGPGGEPVKGSPYAADKRRGYHRQYFPRQGGGRGG 253
           G+T  G  P K S Y   ++R   +     Q G + G
Sbjct: 48  GITSGGPIPTKSSKYPIKRKRVRFQTRVKVQEGSKSG 84


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 595 VVVSIVVPTGLLLLGLAPCCWFDVVAEAS 509
           VV +  +PTG   LG   C W + V ++S
Sbjct: 504 VVYNNKIPTGDGALGGEVCMWGEYVDDSS 532


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 406 DLPHGVHRENCD 371
           D+ HGVH E C+
Sbjct: 212 DIVHGVHNELCN 223


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 55 VTGDGSLMHKHIF 17
          VTG+  +MH+H F
Sbjct: 3  VTGNLGIMHRHCF 15


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -1

Query: 438 STEPSSIHWARTSPTASTAKIAT 370
           +T P+ +  ++ SP A+   +AT
Sbjct: 198 TTSPTKVKASKASPAAAPRSVAT 220


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,198
Number of Sequences: 336
Number of extensions: 3021
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)