Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0904.Seq
(711 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0158 - 1103461-1104186 50 2e-06
08_01_0202 - 1638978-1639571 46 3e-05
04_04_0069 + 22506885-22508354 31 0.90
03_05_0704 - 26953474-26953643,26953770-26953801,26953915-269540... 31 1.2
03_05_0737 + 27258320-27259007,27259263-27259435,27262684-272627... 30 1.6
01_06_0926 + 33075575-33076618 30 1.6
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 30 2.1
03_06_0157 - 32039020-32039175,32039267-32039338,32039478-320396... 30 2.1
04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355 29 2.8
03_01_0483 + 3689155-3689814 29 2.8
05_03_0006 + 7315060-7316292 29 3.6
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662... 29 3.6
04_04_1582 - 34590698-34591199,34593849-34594690 29 4.8
09_04_0350 + 16899076-16900164 28 6.4
07_03_0329 + 16840051-16840917,16840999-16841342,16841444-168415... 28 6.4
04_04_1487 - 33919654-33920399,33920676-33920817 28 6.4
03_06_0609 - 35042276-35042388,35042476-35042527,35042624-350427... 28 8.4
>02_01_0158 - 1103461-1104186
Length = 241
Score = 49.6 bits (113), Expect = 2e-06
Identities = 35/84 (41%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Frame = +2
Query: 5 NDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEXA-GVTGPGGEPVKGS 181
+D ED+FVHQ++I + RS+ +GE VEFA+ E G A VTGP G VKG
Sbjct: 26 DDGSEDLFVHQSSIKADG----FRSLAEGEQVEFAISESEDGRTKAVDVTGPDGSFVKG- 80
Query: 182 PYAADKRRGYHRQYFPRQGGGRGG 253
A G + R GGG GG
Sbjct: 81 --GAGGGGGGGGGFGSRGGGGSGG 102
>08_01_0202 - 1638978-1639571
Length = 197
Score = 46.0 bits (104), Expect = 3e-05
Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Frame = +2
Query: 5 NDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEXA-GVTGPGGEPVKGS 181
+D ED+FVHQ+++ + RS+ DG+ VEF+V +G G A VT PGG + G
Sbjct: 25 DDGGEDLFVHQSSLKSDG----YRSLNDGDVVEFSVGSGNDGRTKAVDVTAPGGGALTGG 80
Query: 182 PYAADKRRGYHRQYFPRQGGGRGG 253
+ G R Y GGGR G
Sbjct: 81 SRPSG---GGDRGYGGGGGGGRYG 101
>04_04_0069 + 22506885-22508354
Length = 489
Score = 31.1 bits (67), Expect = 0.90
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +3
Query: 426 RVPSSASAQFPAGAGRTKSGSAPKWPG*DASATT 527
R P+SA+ + AG+G + +GS P W G A A T
Sbjct: 46 RRPASATRRVAAGSGVSAAGSEPWWCGSTADAAT 79
>03_05_0704 -
26953474-26953643,26953770-26953801,26953915-26954009,
26954107-26954180,26954283-26954412,26954522-26954585,
26954660-26954722,26954795-26954937,26955386-26955523,
26955610-26955731,26955805-26955976,26956559-26956630,
26956753-26956887,26956987-26957103,26957184-26957316,
26957455-26957561,26958060-26958077,26958235-26958379,
26958472-26958671,26960744-26961421
Length = 935
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +2
Query: 116 AGEKGFEXAGVTGPGGEPVKGSPYAADKRRGYHRQYFPRQGGGRGGEEL 262
AGE+G G GG V G+ +++ +H P GGGRGG ++
Sbjct: 54 AGERGGRHDAPRGRGGVAV-GAGAGRQQQQPFHAPAPPSGGGGRGGVQV 101
>03_05_0737 +
27258320-27259007,27259263-27259435,27262684-27262758,
27262832-27263296
Length = 466
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 119 GEKGFEXAGVTGPGGEPVKGSPYAADKRRGYHRQYFPRQGGGRGG 253
G +G++ G G GG + G Y + G Y +GGG GG
Sbjct: 367 GRRGYQNGGRGGRGGRGMGGGGYQNGRGGGGGGGYQNGRGGGEGG 411
>01_06_0926 + 33075575-33076618
Length = 347
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +2
Query: 83 GDGEAVEFAVVAGEKGFEXAGVTGPGGEPVKGSPYAADKRRGYHRQYFPRQGGGRGGE 256
GDG + V G G + A G G +PV+G +D RG P +GG G +
Sbjct: 62 GDGGGAD-PVRGGAGGSDAARGDGGGADPVRGGAGGSDAARGDGGGADPVRGGAGGSD 118
Score = 29.5 bits (63), Expect = 2.8
Identities = 23/71 (32%), Positives = 30/71 (42%)
Frame = +2
Query: 83 GDGEAVEFAVVAGEKGFEXAGVTGPGGEPVKGSPYAADKRRGYHRQYFPRQGGGRGGEEL 262
GDG + V G G + A G G +PV+G +D G P + GG G +
Sbjct: 82 GDGGGAD-PVRGGAGGSDAARGDGGGADPVRGGAGGSDAACGVCGGADPVRSGGSG--SV 138
Query: 263 HAEED*DVVDP 295
A D V DP
Sbjct: 139 AARGDGGVADP 149
>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/56 (28%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Frame = +3
Query: 531 NQQQGAKPKSNKPVGTTIETTTNESQA*TS--RGRYVWHIIYVVHVDSSCVTLHLN 692
++Q+ A+ K+ K VG + TT+ + + +S R + +++H+ SCV++HL+
Sbjct: 839 HEQKIAQNKNGKWVGVSSSTTSEDLEESSSSIRRELLRSTEFLLHIKLSCVSVHLS 894
>03_06_0157 -
32039020-32039175,32039267-32039338,32039478-32039602,
32039678-32040559,32040623-32040692,32041248-32041739,
32041985-32042044,32042541-32042618,32043322-32044344
Length = 985
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +2
Query: 89 GEAVEFAVVAGEKGFEXAGVTGPGGEPVKG 178
GE+ E ++ GE E V GPGGEP G
Sbjct: 388 GESKEDEIIEGEPDPEMEVVAGPGGEPKVG 417
>04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355
Length = 1109
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = +2
Query: 194 DKRRGYHRQY-FPRQGGGRGG 253
D RRGY Y +PR GGG+GG
Sbjct: 8 DPRRGYDGGYGYPRGGGGQGG 28
>03_01_0483 + 3689155-3689814
Length = 219
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +2
Query: 83 GDGEAVEFAVVAGEKGFEXAGVTGPGGEPVKGSPYAADKRRGYHRQYFPRQGGGRGGE 256
GDG + V G + A G G +PV+GS +D RG P +GG G +
Sbjct: 81 GDGGGAD-PVRGSAGGSDAARGDGGGADPVRGSAGGSDAARGDGGGADPVRGGAGGSD 137
Score = 27.9 bits (59), Expect = 8.4
Identities = 20/58 (34%), Positives = 26/58 (44%)
Frame = +2
Query: 83 GDGEAVEFAVVAGEKGFEXAGVTGPGGEPVKGSPYAADKRRGYHRQYFPRQGGGRGGE 256
GDG A AG G + A G G +PV+GS +D RG P +G G +
Sbjct: 62 GDGGADPVRGSAG--GSDAARGDGGGADPVRGSAGGSDAARGDGGGADPVRGSAGGSD 117
>05_03_0006 + 7315060-7316292
Length = 410
Score = 29.1 bits (62), Expect = 3.6
Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 3/78 (3%)
Frame = +2
Query: 44 IARNNPRKAV---RSVGDGEAVEFAVVAGEKGFEXAGVTGPGGEPVKGSPYAADKRRGYH 214
I R++P A + DGE VE A E + VT G AA GY+
Sbjct: 284 IRRDDPGAAAGDDAASSDGELVECAYPPSEASVVWSVVTADGVASAGNFSSAAS---GYY 340
Query: 215 RQYFPRQGGGRGGEELHA 268
Y+ GGG G A
Sbjct: 341 HHYYYHNGGGGDGRRTDA 358
>03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,
6627009-6627116,6627194-6627328,6627429-6627528,
6627763-6627974,6628060-6628125,6628231-6628464,
6628583-6628641,6628716-6628782,6628863-6629192,
6629267-6629335,6629417-6629503,6629605-6629692,
6630057-6630178,6630251-6630355,6630442-6630485,
6630558-6630627,6630711-6630814,6630980-6631189,
6632935-6633018,6633291-6634003,6634115-6634649,
6634703-6634789,6634826-6634970,6635049-6635125,
6635215-6635359,6635462-6635626,6635725-6635958
Length = 1761
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/62 (32%), Positives = 24/62 (38%)
Frame = +3
Query: 369 PSQFSRWTPWGRSWPNE*RRVPSSASAQFPAGAGRTKSGSAPKWPG*DASATTSNQQQGA 548
PS S P +S P P+S P+ SGSAP P SA +N G
Sbjct: 1137 PSSTSSSPPSSQSPPPGSSPPPASPPPSTPSAPPTNSSGSAPSPPSPSQSAPPANTGGGG 1196
Query: 549 KP 554
P
Sbjct: 1197 SP 1198
>04_04_1582 - 34590698-34591199,34593849-34594690
Length = 447
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 83 GDGEAVEFAVVAGEKGFEXAGVTGPGGEPVKGSPYAADKRR 205
GDG E + G+KG G G GG KGS ++++ R
Sbjct: 229 GDGGVEEGSAGGGKKGGGGGGGGGGGGHGEKGSAKSSEQER 269
>09_04_0350 + 16899076-16900164
Length = 362
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 426 RVPSSASAQFPAGAGRTKSGSAPKWPG*DASATT 527
R P+SA+ + AG+ + +GS P W G A A T
Sbjct: 35 RRPASATRRVAAGSDVSAAGSEPWWCGSTADAAT 68
>07_03_0329 +
16840051-16840917,16840999-16841342,16841444-16841574,
16841671-16841792,16841877-16841983,16842104-16842236,
16842342-16842458,16842560-16842667,16842716-16842742,
16842759-16842830,16843462-16843584,16843671-16843833,
16844140-16844264,16844355-16844489,16844574-16844677,
16844772-16844834,16844930-16844993,16845186-16845318,
16845414-16845487,16845603-16845697,16845799-16845830,
16846201-16846355
Length = 1097
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/59 (30%), Positives = 24/59 (40%)
Frame = +2
Query: 77 SVGDGEAVEFAVVAGEKGFEXAGVTGPGGEPVKGSPYAADKRRGYHRQYFPRQGGGRGG 253
S G G+ + G G G G G+PY+ + RG Y +GGG GG
Sbjct: 3 SRGGGQHQRHQQQQQQPGGYGRGGGGGRGRGRDGAPYSGGRGRGQDGSYPGGRGGGYGG 61
>04_04_1487 - 33919654-33920399,33920676-33920817
Length = 295
Score = 28.3 bits (60), Expect = 6.4
Identities = 21/66 (31%), Positives = 30/66 (45%)
Frame = +2
Query: 77 SVGDGEAVEFAVVAGEKGFEXAGVTGPGGEPVKGSPYAADKRRGYHRQYFPRQGGGRGGE 256
++G G A E A GEK E PG + ++ + D+ G R GGG GG+
Sbjct: 116 TIGGGRARELADAGGEKVGEGEN---PGNDELEQLFHTVDELVGESS----RSGGGVGGD 168
Query: 257 ELHAEE 274
E+ E
Sbjct: 169 EVDGAE 174
>03_06_0609 -
35042276-35042388,35042476-35042527,35042624-35042725,
35043546-35043745,35045258-35045336,35045541-35045595,
35045947-35046122,35046386-35046988,35047077-35047265,
35048150-35048201,35048289-35048356,35048873-35048911,
35048912-35048970,35049639-35049782,35050136-35050238,
35050368-35050467,35050596-35050612
Length = 716
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -3
Query: 154 TSNTSXFKAFLPGNHGKLHRLSVADRAHSLTWVVTGDGSLMHK 26
T N ++ FLP G + L + D ++ W ++ + SL HK
Sbjct: 293 TENDCAWQRFLPS--GPIALLPIGDNYSNIVWTMSPEESLRHK 333
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,460,839
Number of Sequences: 37544
Number of extensions: 419363
Number of successful extensions: 1736
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1731
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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