Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0904.Seq
         (711 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81525-8|CAB04257.1|  208|Caenorhabditis elegans Hypothetical pr...    94   1e-19
U88173-8|AAK21380.1|  267|Caenorhabditis elegans C.elegans y-box...    65   4e-11
Z73424-7|CAA97783.1|  294|Caenorhabditis elegans Hypothetical pr...    61   7e-10
AL023839-3|CAA19509.1|  294|Caenorhabditis elegans Hypothetical ...    61   7e-10
U80450-3|AAB37828.1|  265|Caenorhabditis elegans C.elegans y-box...    60   2e-09
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr...    37   0.016
U88166-3|AAO44910.1|  160|Caenorhabditis elegans Collagen protei...    30   1.4  
Z83319-5|CAB05907.2|  446|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z68215-7|CAA92453.1|  289|Caenorhabditis elegans Hypothetical pr...    28   5.7  
AF026215-8|AAB71317.1|  415|Caenorhabditis elegans Hypothetical ...    28   7.6  

>Z81525-8|CAB04257.1|  208|Caenorhabditis elegans Hypothetical
           protein F33A8.3 protein.
          Length = 208

 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 48/83 (57%), Positives = 53/83 (63%)
 Frame = +2

Query: 2   RNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEXAGVTGPGGEPVKGS 181
           R DT ED+FVHQTAI  NNP K +RS+GD E V F +V G KG E A VTGP G PV+GS
Sbjct: 39  RTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVMFDIVEGSKGLEAASVTGPDGGPVQGS 98

Query: 182 PYAADKRRGYHRQYFPRQGGGRG 250
            YAAD  R        R G GRG
Sbjct: 99  KYAAD--RDAENAARGRGGRGRG 119


>U88173-8|AAK21380.1|  267|Caenorhabditis elegans C.elegans y-box
           protein 2 protein.
          Length = 267

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 35/78 (44%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
 Frame = +2

Query: 2   RNDTKEDVFVHQTAIARNNPRKA-VRSVGDGEAVEFAVVAGEKGFEXAGVTGPGGEPVKG 178
           RND ++D+FVHQTAIA++   K  +R++GD E V F +V G+ G E A VTGP G+ V G
Sbjct: 84  RNDGEKDIFVHQTAIAKSATEKFYLRTLGDDEEVLFDLVEGKNGPEAANVTGPNGDNVIG 143

Query: 179 SPYAADKRRGYHRQYFPR 232
           S Y       + +   PR
Sbjct: 144 SRYRHKLLSRFRKNRKPR 161


>Z73424-7|CAA97783.1|  294|Caenorhabditis elegans Hypothetical
           protein Y39A1C.3 protein.
          Length = 294

 Score = 61.3 bits (142), Expect = 7e-10
 Identities = 42/103 (40%), Positives = 55/103 (53%), Gaps = 6/103 (5%)
 Frame = +2

Query: 8   DTKEDVFVHQTAIARNNPRKA-VRSVGDGEAVEFAVVAGEKGFEXAGVTGPGGEPVKGSP 184
           D  ED FVHQTAI +++  K  +R++ D E V F +V G KG E A VTGP GE V+GS 
Sbjct: 112 DENEDFFVHQTAITKSSTIKFYLRTLDDDEPVVFDIVEGLKGPEAANVTGPDGENVRGSR 171

Query: 185 YAAD-----KRRGYHRQYFPRQGGGRGGEELHAEED*DVVDPR 298
           +A       + RG       R G GRG      ++D D  D +
Sbjct: 172 FARTLLTHWRTRG-RGGARGRGGRGRGAPRQTRDQDGDEKDEK 213


>AL023839-3|CAA19509.1|  294|Caenorhabditis elegans Hypothetical
           protein Y39A1C.3 protein.
          Length = 294

 Score = 61.3 bits (142), Expect = 7e-10
 Identities = 42/103 (40%), Positives = 55/103 (53%), Gaps = 6/103 (5%)
 Frame = +2

Query: 8   DTKEDVFVHQTAIARNNPRKA-VRSVGDGEAVEFAVVAGEKGFEXAGVTGPGGEPVKGSP 184
           D  ED FVHQTAI +++  K  +R++ D E V F +V G KG E A VTGP GE V+GS 
Sbjct: 112 DENEDFFVHQTAITKSSTIKFYLRTLDDDEPVVFDIVEGLKGPEAANVTGPDGENVRGSR 171

Query: 185 YAAD-----KRRGYHRQYFPRQGGGRGGEELHAEED*DVVDPR 298
           +A       + RG       R G GRG      ++D D  D +
Sbjct: 172 FARTLLTHWRTRG-RGGARGRGGRGRGAPRQTRDQDGDEKDEK 213


>U80450-3|AAB37828.1|  265|Caenorhabditis elegans C.elegans y-box
           protein 3 protein.
          Length = 265

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
 Frame = +2

Query: 2   RNDTKEDVFVHQTAIARNNPRKA-VRSVGDGEAVEFAVVAGEKGFEXAGVTGPGGEPVKG 178
           R+D ++DVFVHQTAI++++  K  +R++ D E V F +V G+ G E A VTGP G  V G
Sbjct: 82  RSDGEKDVFVHQTAISKSDTEKFYLRTLADEEEVLFDLVDGKNGPEAANVTGPAGVNVSG 141

Query: 179 SPY 187
           S Y
Sbjct: 142 SKY 144


>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
            ZK783.1 protein.
          Length = 2585

 Score = 36.7 bits (81), Expect = 0.016
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +3

Query: 441  ASAQFPAGAGRTKSGSAPKWPG*DASATTSNQQQGAKPKSNKPVGTTIETTTNESQA*TS 620
            +S   P G   T S +AP+ P   AS+T    ++   P ++KP    +ETT   ++  + 
Sbjct: 1284 SSTSAPDGVSPTSSATAPEVPTTSASSTPDAVEESGIPSTSKPTAEPLETTAPSTEVTSP 1343

Query: 621  RG 626
             G
Sbjct: 1344 EG 1345


>U88166-3|AAO44910.1|  160|Caenorhabditis elegans Collagen protein
           53 protein.
          Length = 160

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +2

Query: 119 GEKGFEXAGVTGPGGEPVK-GSPYAADKRRGYHRQYFPRQGGGRGGEELHAEED 277
           G+KGF   GV GP GEP + G  Y +D   G   +  PR   G  G      ED
Sbjct: 49  GDKGFP--GVAGPAGEPGEPGHIYVSDGPPGKDGETGPRGPPGEKGRTGRDGED 100


>Z83319-5|CAB05907.2|  446|Caenorhabditis elegans Hypothetical
           protein T02D1.4 protein.
          Length = 446

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 595 VVVSIVVPTGLLLLGLAPCCWFDVVAEASHPGHFGAE 485
           ++ +IVVP GLLL   A   W  V+  +    HF AE
Sbjct: 266 LLFAIVVPMGLLLFMAASILWKLVLKRSDFVSHFTAE 302


>Z68215-7|CAA92453.1|  289|Caenorhabditis elegans Hypothetical
           protein C53B4.5 protein.
          Length = 289

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +2

Query: 116 AGEKGFEXAGVTGPGGEPVKGSPYAADKRRGYHRQYFPRQGGGRG 250
           AG KG   AG  GPGG+P    P   + R G  +   P + G  G
Sbjct: 173 AGNKG--PAGPPGPGGKPGPAGPPGENGRNGEPQPGSPGEPGRPG 215


>AF026215-8|AAB71317.1|  415|Caenorhabditis elegans Hypothetical
           protein F09G2.9 protein.
          Length = 415

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 456 PAGAGRTKSGSAPKWPG*DASATTSNQQQGAKPKS 560
           P+G GR +    P  P     A  S +++ AKPK+
Sbjct: 222 PSGRGRGRGRGRPPGPNATPKAAASEKKRAAKPKA 256


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,968,635
Number of Sequences: 27780
Number of extensions: 297309
Number of successful extensions: 947
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)