Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0904.Seq
         (711 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    25   0.71 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   2.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.8  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   8.7  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   8.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.7  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 86  DGEAVEFAVVAGEKGFEXAGVTGPGGEPV 172
           DG+ V    VA E GF+  G   P   P+
Sbjct: 81  DGQQVSITYVADENGFQVQGSHIPTAPPI 109


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 610 AWLSLVVVSIVVPTGLLLL 554
           A LSLVVV++ + TG  LL
Sbjct: 60  AMLSLVVVTVAISTGEWLL 78


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = -3

Query: 559 LLGLAPCCWFDV 524
           ++G  PCCW+ +
Sbjct: 482 MIGYYPCCWWKI 493


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = -3

Query: 559 LLGLAPCCWFDV 524
           ++G  PCCW+ +
Sbjct: 535 MIGYYPCCWWKI 546


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 409 QDLPHGVHRENCDGKN 362
           Q++  GV REN  GKN
Sbjct: 16  QNIRGGVVRENSSGKN 31


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 247 SSATLTREILAVVATALVC 191
           S  T+TR + AVV T  +C
Sbjct: 254 SRKTITRMLSAVVITFFIC 272


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 408 WPNE*RRVPSSASAQFPAGAGRTKSGSAP 494
           W N+     +S S  +P G   + S S+P
Sbjct: 68  WFNDSAAAITSTSPSYPGGGSSSPSPSSP 96


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,076
Number of Sequences: 438
Number of extensions: 3849
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)