Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0903.Seq
         (664 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00015B63B2 Cluster: PREDICTED: similar to organic an...    41   0.031
UniRef50_A0YYP3 Cluster: Transposase; n=12; Cyanobacteria|Rep: T...    40   0.071
UniRef50_Q3US56 Cluster: 16 days embryo head cDNA, RIKEN full-le...    34   3.5  
UniRef50_UPI0000F1D593 Cluster: PREDICTED: similar to MPDZ varia...    33   4.6  
UniRef50_Q4T1P0 Cluster: Chromosome undetermined SCAF10522, whol...    33   4.6  
UniRef50_Q4P4F6 Cluster: Putative uncharacterized protein; n=1; ...    33   8.1  

>UniRef50_UPI00015B63B2 Cluster: PREDICTED: similar to organic anion
            transporter; n=1; Nasonia vitripennis|Rep: PREDICTED:
            similar to organic anion transporter - Nasonia
            vitripennis
          Length = 992

 Score = 40.7 bits (91), Expect = 0.031
 Identities = 16/20 (80%), Positives = 19/20 (95%)
 Frame = +1

Query: 178  VVTLMEFRLDSAEYCQAQHK 237
            ++T MEF+LDSAEYCQAQHK
Sbjct: 973  ILTYMEFQLDSAEYCQAQHK 992


>UniRef50_A0YYP3 Cluster: Transposase; n=12; Cyanobacteria|Rep:
           Transposase - Lyngbya sp. PCC 8106
          Length = 427

 Score = 39.5 bits (88), Expect = 0.071
 Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = -3

Query: 611 TVTLFPHNTRQSRSFCFERVQLYNGNCPH*CRFHHSNASES-DQTKVQNVETN*IKSLGN 435
           T+ + PHNT Q+ S C  +V        H C  HH   SE  D    +N+    + ++G 
Sbjct: 345 TIPVAPHNTSQNCSNCGNKVPKSLSTRTHIC--HHCGYSEDRDVNAAKNILKKALSTVGQ 402

Query: 434 IGPLKTSATELLAVLNSS 381
            G LK    E L VL  S
Sbjct: 403 TGSLKLGEIEPLLVLEQS 420


>UniRef50_Q3US56 Cluster: 16 days embryo head cDNA, RIKEN
           full-length enriched library, clone:C130019G03
           product:hypothetical protein, full insert sequence; n=2;
           Murinae|Rep: 16 days embryo head cDNA, RIKEN full-length
           enriched library, clone:C130019G03 product:hypothetical
           protein, full insert sequence - Mus musculus (Mouse)
          Length = 88

 Score = 33.9 bits (74), Expect = 3.5
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +2

Query: 29  CKLLTFNSVYNDSFCCACK*FQFFHRLNNFSFVLLTLFCLAEVC 160
           C++ +  S +  + CC  K F F  +L  F F+LL+ F L E C
Sbjct: 2   CEIDSLASTFVPNLCCGPKGFHFSLKLVFFFFLLLSFFILDEFC 45


>UniRef50_UPI0000F1D593 Cluster: PREDICTED: similar to MPDZ variant
           protein; n=1; Danio rerio|Rep: PREDICTED: similar to
           MPDZ variant protein - Danio rerio
          Length = 489

 Score = 33.5 bits (73), Expect = 4.6
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = -1

Query: 349 VGMWNSARGASSHRRYRQHGSSGWRSPALAFTKHFLFICVEPGSTPRCPSGTPS 188
           VGM   +R   S     ++G++GW+ P  +F+   L IC +    P   S  PS
Sbjct: 106 VGMEEDSRSGCSIHSVEENGAAGWKEPQSSFS---LTICADSAPQPSSSSQMPS 156


>UniRef50_Q4T1P0 Cluster: Chromosome undetermined SCAF10522, whole
            genome shotgun sequence; n=2; Tetraodon nigroviridis|Rep:
            Chromosome undetermined SCAF10522, whole genome shotgun
            sequence - Tetraodon nigroviridis (Green puffer)
          Length = 1540

 Score = 33.5 bits (73), Expect = 4.6
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = -1

Query: 334  SARGASSHRRY-RQHGSSGWRSPALAFTKHFLFICVEPGSTPRCPSGTPSMSPQKGSP 164
            S R A  ++R  R  G    RSP  A  +H      EP + PRC S  P   P+K  P
Sbjct: 1318 SRRAAGGNQRATRAAGGRRRRSPGPAHPRHKGPAHEEPPTAPRCDSAPPPEGPEKEKP 1375


>UniRef50_Q4P4F6 Cluster: Putative uncharacterized protein; n=1;
            Ustilago maydis|Rep: Putative uncharacterized protein -
            Ustilago maydis (Smut fungus)
          Length = 1215

 Score = 32.7 bits (71), Expect = 8.1
 Identities = 18/61 (29%), Positives = 26/61 (42%)
 Frame = -1

Query: 346  GMWNSARGASSHRRYRQHGSSGWRSPALAFTKHFLFICVEPGSTPRCPSGTPSMSPQKGS 167
            G  + + GAS H +  +  SSGW SPA+A           P   P   +  P  +  + S
Sbjct: 1092 GSVSGSLGASPHAQAVRRASSGWTSPAVASAGAMRHWNTSPNLRPVADASLPHSTAHRPS 1151

Query: 166  P 164
            P
Sbjct: 1152 P 1152


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 622,602,071
Number of Sequences: 1657284
Number of extensions: 12281884
Number of successful extensions: 33739
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 32533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33731
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50413227838
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)