Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0903.Seq
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    28   1.0  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   2.4  
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c...    26   5.6  
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    26   5.6  

>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = -1

Query: 247 FLFICVEPGSTPRCPSGTPSMSPQKGSPVTYFR*AE*S**HKTKVIQPMKELKLFAR 77
           F  IC+  G  PR P      +    +PVT++   +        ++Q  +E K+FAR
Sbjct: 33  FRRICILKGVYPREPKNKKKANKGSTAPVTFYYTKDIQYLLHEPIVQKFREYKVFAR 89


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 299  AAWVQRMALSCSRLHETLPVYLC 231
            A+W +R   SCS++  TLP   C
Sbjct: 2091 ASWTERRLQSCSQIEVTLPCVEC 2113


>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 367

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -2

Query: 81  HAQQKLSL*TELKVRSLHCSGSTLS 7
           H QQ+ S    L VR L C  STLS
Sbjct: 159 HTQQRYSTLKRLMVRCLSCEYSTLS 183


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 16/73 (21%), Positives = 31/73 (42%)
 Frame = -3

Query: 302  PAAWVQRMALSCSRLHETLPVYLC*AWQYSALSKRNSINVTTEGISSYILPLGRIKLITQ 123
            P  W+    +S    + TL +     +Q+  + K+N  N     +  ++  LG    + +
Sbjct: 971  PEQWIAMDDISTKWGNHTLKITTRQTFQWHGVLKKNLRNTIRNIVKVFLTTLGACGDVAR 1030

Query: 122  N*SYSTDERTETI 84
            N + S+    ETI
Sbjct: 1031 NVTCSSTPNNETI 1043


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,560,855
Number of Sequences: 5004
Number of extensions: 50938
Number of successful extensions: 124
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)