Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0903.Seq
         (664 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0493 - 8866685-8866888,8866989-8867059,8867143-8867416,886...    30   1.4  
09_04_0323 - 16679565-16679939,16680328-16680660,16680721-166810...    29   4.4  
11_01_0471 - 3648871-3649078,3649841-3649926,3650111-3650155,365...    28   7.6  
06_01_0866 + 6582131-6583294                                           28   7.6  
01_01_1236 - 10020837-10021041,10021746-10021831,10022552-100230...    28   7.6  

>03_02_0493 -
           8866685-8866888,8866989-8867059,8867143-8867416,
           8867666-8868036,8868127-8868482,8868558-8868630,
           8869307-8869412,8869667-8869760,8870616-8870680,
           8871655-8871927
          Length = 628

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -1

Query: 616 DKLSLYFHTTHDSLVAFVLKGSNYIMGTARIDVVFTTRTHPKAIKQ 479
           DK S    T H SLV+  ++G+NY   + R+D       HP+ IK+
Sbjct: 269 DKTSGQSPTKHSSLVSKYIRGNNYASSSQRLD-------HPRRIKE 307


>09_04_0323 -
           16679565-16679939,16680328-16680660,16680721-16681032,
           16683590-16683825,16683972-16684239
          Length = 507

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 269 RRAPSAGPMLPVAAVTRRTSRTVPHTYPSSVT 364
           RR PS+ P  P AA +    R  PHT  S +T
Sbjct: 58  RRRPSSAPHPPPAAASTSALRPRPHTQNSELT 89


>11_01_0471 -
           3648871-3649078,3649841-3649926,3650111-3650155,
           3650306-3650815,3651700-3653757
          Length = 968

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 521 INAGSSHYIIGPFQNKSYETVVCCVEI 601
           +  G S Y+  P  N SY+ +V CV +
Sbjct: 601 LQLGQSSYLPHPIDNDSYDRIVLCVRL 627


>06_01_0866 + 6582131-6583294
          Length = 387

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 337 NSARGASSHRRYRQHGSSG 281
           N A+G+S HR+++ HG  G
Sbjct: 354 NGAQGSSQHRQHQHHGGGG 372


>01_01_1236 -
           10020837-10021041,10021746-10021831,10022552-10023061,
           10023914-10025965
          Length = 950

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 521 INAGSSHYIIGPFQNKSYETVVCCVEI 601
           +  G S Y+  P  N SY+ +V CV +
Sbjct: 599 LQLGQSSYLPHPIDNDSYDRIVLCVRL 625


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,927,045
Number of Sequences: 37544
Number of extensions: 342855
Number of successful extensions: 919
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)