Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0903.Seq
         (664 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82285-7|CAB05301.1|  548|Caenorhabditis elegans Hypothetical pr...    29   3.9  
U40029-11|AAA81130.1|  914|Caenorhabditis elegans Tudor staphylo...    27   9.0  

>Z82285-7|CAB05301.1|  548|Caenorhabditis elegans Hypothetical
           protein T28F3.8 protein.
          Length = 548

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 547 YIMGTARIDVVFTTRTHPKAIKQKFRMWKQIKLNHSET 434
           Y+MGTA +D +  TR+     K   +   ++++ HSET
Sbjct: 226 YLMGTAYLDSLTVTRSFADRTKAAQKQIGKLRVPHSET 263


>U40029-11|AAA81130.1|  914|Caenorhabditis elegans Tudor
           staphylococcal nuclease homologprotein 1 protein.
          Length = 914

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = -2

Query: 327 EVRLVTAATGSMGPADGALLLSPSRNTSCLFVLSLAVLRAVQAELH 190
           EV+L   +T   G   G L +SP  NTS    LS A++    A LH
Sbjct: 594 EVQLEVESTDKNGNFVGYLYVSPDGNTSRAINLSEALVENGLASLH 639


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,559,744
Number of Sequences: 27780
Number of extensions: 303586
Number of successful extensions: 761
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)