Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0902X.Seq
(548 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 75 5e-15
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 27 1.8
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 27 2.4
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1... 27 2.4
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra... 26 3.2
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 26 3.2
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc... 25 5.6
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa... 25 7.3
SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|ch... 25 9.7
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 75.4 bits (177), Expect = 5e-15
Identities = 32/72 (44%), Positives = 50/72 (69%)
Frame = -2
Query: 502 NYRNGINKGLYKIMSKMGISTIASYRCSKLFEAVGLHDDVVRLCFQGAVSRIGGASFEDF 323
N+++ IN G+ K+MSKMGIST+ SY+ +++FEA+G+ ++V+ CF G SRI G +FE
Sbjct: 779 NFKHAINGGILKVMSKMGISTLQSYKGAQIFEALGIDNEVINKCFLGTASRIRGVTFEHI 838
Query: 322 QQDLLNLSKRAW 287
D L +R +
Sbjct: 839 ALDAFALHERGY 850
Score = 29.9 bits (64), Expect = 0.26
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -3
Query: 81 AVNIADVEPASELFKRFDTAAMSIGAL 1
A+ I VEP +E+ +RF T AMS G++
Sbjct: 927 AIPIEQVEPWTEIVRRFCTGAMSYGSI 953
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 27.1 bits (57), Expect = 1.8
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = -1
Query: 227 HAYNPDVVRTLQQAVQSGEYSDYQEYAKLVNERPATSCAICWQL 96
HA+ D +RTL A + + S+YQ + KLVN+ S + QL
Sbjct: 1014 HAFATDGLRTLMYAHRFIDESEYQSW-KLVNDAALNSLSNRQQL 1056
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 26.6 bits (56), Expect = 2.4
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 200 TLQQAVQSGEYSDYQEYAKLVNERPAT 120
TLQ V++ E S+ Q +LV E+P+T
Sbjct: 995 TLQDLVKNLEASEQQSLQRLVTEKPST 1021
>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 26.6 bits (56), Expect = 2.4
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +1
Query: 226 WYSPPWTYFRHRPG*WAYAPATHVSTDSA 312
W + W+Y+RH+P W + ++S + A
Sbjct: 320 WIANNWSYYRHQPPAWHNSIRHNLSLNKA 348
>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
3-phosphatidyltransferase Pis1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 26.2 bits (55), Expect = 3.2
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -1
Query: 266 PGRC-LKYVHGGEYHAYNPDVVRTLQQAVQSGEYSDYQEYAKLVNERPATSCAICW 102
P C + Y++ A++ R L QA G D +V +R ATSC +C+
Sbjct: 52 PNYCTIVYLYSSLLDAFDGWAARKLHQATNFGAILD------MVTDRCATSCLLCF 101
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 26.2 bits (55), Expect = 3.2
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +1
Query: 298 STDSADPAGSLQSLLHQCG*PPPGSTGALHHRVDRPLQTVSSSGKRRXWRCPFWT 462
ST + D S + L+ C P S R+ + L T++ K+R W C F T
Sbjct: 1518 STTTLDEE-SWKRLIESC----PASQREYMQRLQKKLVTLAEQDKKRVWICSFRT 1567
>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
polymerase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1120
Score = 25.4 bits (53), Expect = 5.6
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -1
Query: 479 RLVQNHVQNGHLHXRLLPLLET 414
+L+ ++ HLH +LLP+L T
Sbjct: 499 KLLSRDIEKPHLHPQLLPMLVT 520
>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 25.0 bits (52), Expect = 7.3
Identities = 21/68 (30%), Positives = 28/68 (41%)
Frame = +2
Query: 2 NAPIDIAAVSKRLNSSLAGSTSAMLTAFSPGVIASRSRSWLPDAH*PASRIPDSRCTRRF 181
N P A V K +S LAG+ + +T S + + S DA P D R T
Sbjct: 6 NTPPTYAWVLKAFSSKLAGTVTKPVTKMSSYIEDAES-----DAELPQDAKEDLRPTETL 60
Query: 182 VPLVAACA 205
PL + A
Sbjct: 61 TPLKSKAA 68
>SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = -3
Query: 540 THAIAKDYRTVCSTTVTASTKACTKSC 460
+H DY C TV S + TK+C
Sbjct: 87 SHVEVIDYNIECKKTVALSMDSITKTC 113
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,197,763
Number of Sequences: 5004
Number of extensions: 42033
Number of successful extensions: 131
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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