Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0902X.Seq
(548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0276 - 28084746-28085003,28085103-28085357,28085531-280857... 77 7e-15
05_07_0059 + 27402365-27402733,27402848-27402982,27403070-274031... 74 7e-14
07_03_1555 - 27669981-27670148,27670232-27670315,27670349-276703... 59 2e-09
12_01_0744 - 6688631-6688660,6689032-6690603,6690697-6691497 30 1.1
02_03_0268 + 17100666-17101235 30 1.1
01_06_0873 + 32617428-32617532,32618166-32618234,32619195-326193... 29 3.2
04_03_0803 - 19835284-19836050,19836337-19836418 28 4.3
09_06_0194 - 21469815-21470117,21470226-21470376,21470463-214707... 27 7.5
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975... 27 9.9
05_07_0004 + 26990250-26990516,26990877-26990931,26991286-269914... 27 9.9
02_01_0784 + 5843029-5843427,5843699-5844532 27 9.9
>01_06_0276 - 28084746-28085003,28085103-28085357,28085531-28085798,
28085948-28086253,28086369-28086643,28087034-28087252,
28087486-28089015,28089236-28089397,28089512-28089666,
28090195-28091064,28091363-28091832,28091917-28091981,
28092105-28092448,28092531-28092710,28092817-28092920,
28093053-28093162,28093648-28093744,28094138-28094238,
28094324-28094476,28094561-28094674,28094795-28094884,
28094960-28095307
Length = 2157
Score = 77.4 bits (182), Expect = 7e-15
Identities = 35/71 (49%), Positives = 52/71 (73%)
Frame = -2
Query: 484 NKGLYKIMSKMGISTIASYRCSKLFEAVGLHDDVVRLCFQGAVSRIGGASFEDFQQDLLN 305
N G+ K+++KMGIST+ASY+ +++FEA+GL +V+R CF G SRI GA+FE +D L
Sbjct: 823 NYGMMKVLAKMGISTLASYKGAQIFEALGLSSEVIRKCFDGTPSRIEGATFEMLARDALR 882
Query: 304 LSKRAWLARKP 272
L + A+ +R P
Sbjct: 883 LHELAFPSRAP 893
Score = 37.9 bits (84), Expect = 0.005
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = -3
Query: 117 LRDLLAITPGENAVNIADVEPASELFKRFDTAAMSIGAL 1
LR +L + +++ +VEPASE+ KRF T AMS G++
Sbjct: 956 LRGMLKFKDTADMISVDEVEPASEIVKRFVTGAMSYGSI 994
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -1
Query: 236 GEYHAYNPDVVRTLQQAVQSGEYSDYQEYAKLVNE 132
GE H +P + LQ+A + + Y+EY++ + E
Sbjct: 915 GEVHLNDPLAMAKLQEAARVNSRAAYKEYSRRIQE 949
>05_07_0059 + 27402365-27402733,27402848-27402982,27403070-27403183,
27403297-27403449,27403544-27403644,27403945-27404041,
27404542-27404651,27404775-27404878,27405129-27405308,
27405398-27405741,27405841-27405905,27405981-27406450,
27406939-27407793,27408045-27408116,27408475-27408575,
27409069-27409170,27409295-27409456,27409665-27411230,
27411384-27411602,27413924-27414198,27414291-27414596,
27414727-27415012,27415085-27415087,27415162-27415416,
27415537-27415803
Length = 2236
Score = 74.1 bits (174), Expect = 7e-14
Identities = 34/69 (49%), Positives = 51/69 (73%)
Frame = -2
Query: 484 NKGLYKIMSKMGISTIASYRCSKLFEAVGLHDDVVRLCFQGAVSRIGGASFEDFQQDLLN 305
N G+ K+++KMGIST+ASY+ +++FEA+GL +VV CF+G SR+ GA+FE QD L
Sbjct: 840 NYGMMKVLAKMGISTLASYKGAQIFEALGLASEVVSKCFEGTPSRVEGATFEMLAQDALR 899
Query: 304 LSKRAWLAR 278
L + A+ +R
Sbjct: 900 LHEIAFPSR 908
Score = 37.1 bits (82), Expect = 0.009
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = -3
Query: 117 LRDLLAITPGENAVNIADVEPASELFKRFDTAAMSIGAL 1
LR +L N +++ +VEPA E+ KRF T AMS G++
Sbjct: 973 LRGMLKFREIPNQISLDEVEPAKEIVKRFCTGAMSYGSI 1011
>07_03_1555 -
27669981-27670148,27670232-27670315,27670349-27670360,
27670683-27670761,27670840-27671078,27671167-27671260,
27671342-27671484,27671688-27671786,27671870-27671998,
27672123-27672197,27672308-27672520,27672581-27672676,
27673282-27673380,27673600-27673839,27674212-27674322,
27674429-27674626,27674720-27674835,27675076-27675193,
27675761-27675866,27675972-27676030,27676259-27676388,
27676730-27676887,27677672-27677887,27677972-27678082,
27678313-27678472,27679364-27679509,27679603-27679695,
27680610-27680706,27681224-27681294,27681407-27681505,
27682037-27682168,27682287-27682729,27683252-27683564,
27684301-27684549
Length = 1631
Score = 59.3 bits (137), Expect = 2e-09
Identities = 27/59 (45%), Positives = 41/59 (69%)
Frame = -2
Query: 502 NYRNGINKGLYKIMSKMGISTIASYRCSKLFEAVGLHDDVVRLCFQGAVSRIGGASFED 326
N+ + GL KI+SKMGIS ++SY +++FE GL +VV L F G+VS+IGG + ++
Sbjct: 803 NFIKAVKSGLLKILSKMGISLLSSYCGAQIFEIYGLGQEVVDLAFCGSVSKIGGLTLDE 861
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/41 (43%), Positives = 25/41 (60%)
Frame = -3
Query: 123 NQLRDLLAITPGENAVNIADVEPASELFKRFDTAAMSIGAL 1
N LRDLL + + I VEPA+ + +RF T MS+GA+
Sbjct: 939 NVLRDLLELKSDRAPIPIGKVEPATSIVERFCTGGMSLGAI 979
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 233 EYHAYNPDVVRTLQQAVQSGEYSDYQEYAKLVNERP 126
EYHA NP++ + L +AV+ + Y Y + + RP
Sbjct: 902 EYHANNPEMSKLLHKAVREKSDNAYTVYQQHLASRP 937
>12_01_0744 - 6688631-6688660,6689032-6690603,6690697-6691497
Length = 800
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +3
Query: 276 LRASHARFDRFSRSCWKSSKLAPPMRLTAPWKHRRTTSSCRP 401
L + FDR S +S + PP R PW + TSS RP
Sbjct: 334 LEVIYGCFDRSSEYTVRSPPV-PPWRAVIPWNKAKMTSSSRP 374
>02_03_0268 + 17100666-17101235
Length = 189
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 38 LNSSLAGSTSAMLTAFSPGVIASRSRSWLPDAH*PASRI 154
++ + AGSTS+ L G SR R W PD H P +I
Sbjct: 121 MDVAAAGSTSSNLVKAGSGSRLSRKRLWRPDLH-PGGQI 158
>01_06_0873 +
32617428-32617532,32618166-32618234,32619195-32619380,
32619687-32619776,32620389-32620462,32621149-32621260,
32621413-32621468,32621826-32621880,32621965-32622021,
32622696-32622797,32623467-32623547,32623756-32623808,
32625245-32625314,32626540-32626603,32627339-32627487,
32627564-32627719,32628011-32628108,32628763-32628847,
32628932-32628997,32629066-32629125,32629408-32629494,
32630307-32630360,32630538-32630576,32630651-32630779,
32630859-32630911,32630984-32631032,32632240-32632298,
32633111-32633259,32633338-32633492,32633719-32633847,
32633932-32634017,32634220-32634335,32634429-32634541,
32635335-32635458,32635540-32635658,32636289-32636490,
32636586-32636757,32637852-32638176,32638442-32638529,
32638970-32639059,32639169-32639370,32639681-32639705
Length = 1450
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -3
Query: 537 HAIAKDYRTVCSTTVTASTKACTKSCPKWASPXSPLTAARN 415
HAI K+ CS+ V + C PK S SP+ A+N
Sbjct: 31 HAILKELMGSCSSQVQCTCLECFCKKPKLRSLSSPMEIAQN 71
>04_03_0803 - 19835284-19836050,19836337-19836418
Length = 282
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = +1
Query: 277 YAPATHVSTDSADPAGSLQSLLHQCG*PPPGST 375
Y P H T S GS + H C PPP T
Sbjct: 144 YPPMQHCQTSSTTWTGSCPTQCHCCPKPPPPET 176
>09_06_0194 -
21469815-21470117,21470226-21470376,21470463-21470700,
21470784-21470991,21471107-21471309,21471407-21471508,
21471622-21472945
Length = 842
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +1
Query: 352 G*PPPGSTGALHHRVDRPLQTVSSSGKRRXWRCPFWT 462
G P PGS + +RPLQ +G R WR WT
Sbjct: 186 GDPSPGSF-SFGVDPERPLQAKIWNGSRVHWRSSMWT 221
>09_06_0198 - 21496692-21496991,21497111-21497258,21497341-21497578,
21497679-21497889,21497977-21498170,21498263-21498364,
21498525-21499879,21501193-21501494,21501600-21501750,
21501838-21502102,21502155-21502362,21502467-21502660,
21502749-21502850,21503481-21503680,21504010-21504846,
21505806-21506107,21506209-21506359,21506447-21506684,
21506764-21506971,21507078-21507271,21507322-21507462,
21513484-21514811,21515923-21516227,21516331-21516481,
21516570-21516807,21516881-21517088,21517197-21517366,
21517451-21517549,21517708-21519029,21521601-21521683
Length = 3314
Score = 27.1 bits (57), Expect = 9.9
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +1
Query: 352 G*PPPGSTGALHHRVDRPLQTVSSSGKRRXWRCPFWT*FCTS 477
G P PGS + + LQ V +G R WR WT + TS
Sbjct: 2662 GDPSPGSF-SYGMDPETSLQLVMWNGSRPYWRTTVWTGYLTS 2702
>05_07_0004 +
26990250-26990516,26990877-26990931,26991286-26991461,
26991702-26991923,26992001-26992239,26992437-26992962,
26993042-26993315,26993391-26994009,26994082-26994121,
26994263-26994310,26994548-26994814,26994892-26995155,
26995260-26995904
Length = 1213
Score = 27.1 bits (57), Expect = 9.9
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = -2
Query: 448 ISTIASYRCSKLFEAVGLHDDVVRLCFQGAVSRIGGASFEDFQQDLLNL 302
I T+ S+ K +A+GL++D+++ ++GAV + F LNL
Sbjct: 238 IRTVVSFNGEK--KAIGLYNDLIKKAYKGAVKE---GFIQGFGMGFLNL 281
>02_01_0784 + 5843029-5843427,5843699-5844532
Length = 410
Score = 27.1 bits (57), Expect = 9.9
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = -1
Query: 275 AHQPGRCLKYVHGGEYHAYNPDVVRTLQQAVQSGEYSDYQEYAKLVNERPATSCA 111
+H+ GRCL V GG H + V Q ++ GE + +K N T+ A
Sbjct: 205 SHRDGRCLPVVPGGSLHLMD-KVDAVDSQCLELGEKYMHDSLSKRANGFHKTNLA 258
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,874,403
Number of Sequences: 37544
Number of extensions: 339085
Number of successful extensions: 999
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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