Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0902X.Seq
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49889-5|CAA90070.1| 2207|Caenorhabditis elegans Hypothetical pr...    80   9e-16
Z49868-5|CAA90032.1| 2207|Caenorhabditis elegans Hypothetical pr...    80   9e-16
Z68159-3|CAD89733.1|  351|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AL031635-6|CAA21044.1|  761|Caenorhabditis elegans Hypothetical ...    27   8.9  

>Z49889-5|CAA90070.1| 2207|Caenorhabditis elegans Hypothetical protein
            W07E11.1 protein.
          Length = 2207

 Score = 80.2 bits (189), Expect = 9e-16
 Identities = 36/80 (45%), Positives = 54/80 (67%)
 Frame = -2

Query: 499  YRNGINKGLYKIMSKMGISTIASYRCSKLFEAVGLHDDVVRLCFQGAVSRIGGASFEDFQ 320
            YR G+ +G++K+M+KMGIST+ SY+ +++FE VGL  DVV +CF+  VSR+GGA+FE   
Sbjct: 777  YRQGVERGIFKVMAKMGISTLHSYKHAQIFEIVGLAKDVVDMCFKNTVSRLGGATFEILA 836

Query: 319  QDLLNLSKRAWLARKPISQG 260
             + L   + A+      S G
Sbjct: 837  AEALKRHRSAFPTTSDASFG 856



 Score = 33.9 bits (74), Expect = 0.077
 Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
 Frame = -3

Query: 117  LRDLLAI-TPGENAVNIADVEPASELFKRFDTAAMSIGAL 1
            LR  L I T  +  + +++VEPASE+ K+F T AMS G++
Sbjct: 914  LRGQLEIKTSKKIQIPLSEVEPASEIVKKFVTGAMSFGSI 953



 Score = 27.1 bits (57), Expect = 8.9
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -1

Query: 239  GGEYHAYNPDVVRTLQQAVQSGEYSDYQEYAKLVNERPATSCAICWQLRRVKT 81
            GGE H   P  +  LQ A +      +QEY+ L +      C +  QL  +KT
Sbjct: 872  GGEKHINEPLAIAKLQAAARLNNSKTFQEYS-LASNMAQRWCTLRGQL-EIKT 922


>Z49868-5|CAA90032.1| 2207|Caenorhabditis elegans Hypothetical protein
            W07E11.1 protein.
          Length = 2207

 Score = 80.2 bits (189), Expect = 9e-16
 Identities = 36/80 (45%), Positives = 54/80 (67%)
 Frame = -2

Query: 499  YRNGINKGLYKIMSKMGISTIASYRCSKLFEAVGLHDDVVRLCFQGAVSRIGGASFEDFQ 320
            YR G+ +G++K+M+KMGIST+ SY+ +++FE VGL  DVV +CF+  VSR+GGA+FE   
Sbjct: 777  YRQGVERGIFKVMAKMGISTLHSYKHAQIFEIVGLAKDVVDMCFKNTVSRLGGATFEILA 836

Query: 319  QDLLNLSKRAWLARKPISQG 260
             + L   + A+      S G
Sbjct: 837  AEALKRHRSAFPTTSDASFG 856



 Score = 33.9 bits (74), Expect = 0.077
 Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
 Frame = -3

Query: 117  LRDLLAI-TPGENAVNIADVEPASELFKRFDTAAMSIGAL 1
            LR  L I T  +  + +++VEPASE+ K+F T AMS G++
Sbjct: 914  LRGQLEIKTSKKIQIPLSEVEPASEIVKKFVTGAMSFGSI 953



 Score = 27.1 bits (57), Expect = 8.9
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -1

Query: 239  GGEYHAYNPDVVRTLQQAVQSGEYSDYQEYAKLVNERPATSCAICWQLRRVKT 81
            GGE H   P  +  LQ A +      +QEY+ L +      C +  QL  +KT
Sbjct: 872  GGEKHINEPLAIAKLQAAARLNNSKTFQEYS-LASNMAQRWCTLRGQL-EIKT 922


>Z68159-3|CAD89733.1|  351|Caenorhabditis elegans Hypothetical
           protein C33D9.3b protein.
          Length = 351

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +3

Query: 255 TPPWLMGL--RASHARFDRFSRSCWKSSKLAPPMRLTAPWKHRRTTSSC 395
           +PP ++G     S +   R S+S  KSS LA P RL A   +R T S C
Sbjct: 66  SPPNVIGCPETTSFSSTSRKSKSS-KSSPLASPTRLVASELNRNTYSDC 113


>AL031635-6|CAA21044.1|  761|Caenorhabditis elegans Hypothetical
           protein Y47D3B.9 protein.
          Length = 761

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -1

Query: 167 SDYQEYAKLVNERPATSCAICWQLRRVKTRSTLLM 63
           S+  E+ K +NE+    C  CW++ +    ST  M
Sbjct: 353 SEIWEHYKCLNEKQNVECIYCWKVLKRNDSSTKSM 387


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,608,170
Number of Sequences: 27780
Number of extensions: 258413
Number of successful extensions: 733
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)