Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0902X.Seq
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    27   0.17 
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    26   0.22 
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   2.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.0  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   2.0  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   3.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   3.6  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    22   4.7  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   4.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   6.2  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 254 LKYVHGGEYHAYNPDVVRTLQQAVQSGEYSDYQEY 150
           L  +H  +Y  Y+ D     Q A+QSGEY   + Y
Sbjct: 36  LNVIHKWKYLDYDFDNDERRQAAIQSGEYDRTKNY 70


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 260 RCLKYVHGGEYHAYNPDVVRTLQQAVQSGEYSDYQEY 150
           + L  +H  +Y  Y+       Q A+QSGEY   + Y
Sbjct: 30  KSLNVIHEWKYFDYDFGSEERRQAAIQSGEYDHTKNY 66


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 254 LKYVHGGEYHAYNPDVVRTLQQAVQSGEYSDYQEY 150
           +  +H  +Y  Y+       Q A+QSGEY   + Y
Sbjct: 35  MNVIHEWKYIDYDFGSDEKRQAAIQSGEYDYTKNY 69


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 357 TAPWKHRRTTSSCRPTASNSFEQR 428
           T P K R+T ++ +P  S+  EQ+
Sbjct: 789 TTPKKERKTATTTQPVISSRKEQK 812


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 254 LKYVHGGEYHAYNPDVVRTLQQAVQSGEYSDYQEY 150
           +  +H  +Y  Y+       Q A+QSGEY   + Y
Sbjct: 35  MNVIHEWKYLDYDFGSDERRQAAMQSGEYDHTKNY 69


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -1

Query: 254 LKYVHGGEYHAYNPDVVRTLQQAVQSGEYSDYQEY 150
           LK ++  +Y  Y+       Q A+QSG+Y+    Y
Sbjct: 29  LKVIYEWKYIDYDFGSDEKRQAAIQSGDYNYTMNY 63


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -2

Query: 340 ASFEDFQQDLLNLSKRAWLARKPISQGGV 254
           A+ +  ++D LNLS   W A   +   G+
Sbjct: 598 ANTDGTEEDALNLSSAVWFAWGVLLNSGI 626


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 284 QPRTFRQIQQILLEVFKAC 340
           Q   +++IQQIL+ + K C
Sbjct: 255 QAEEYKKIQQILIRMNKLC 273


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 233 EYHAYNPDVVRTLQQAVQSGEYS 165
           +Y  YN       Q A+QSGEY+
Sbjct: 39  KYFDYNFGSDEKRQAAIQSGEYN 61


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 236  GEYHAYNPDVVRTLQQAVQSGEYS 165
            G+Y  Y+ D +    +AVQ GE S
Sbjct: 1038 GKYRNYDRDSLVEAVRAVQRGEMS 1061


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,660
Number of Sequences: 438
Number of extensions: 2702
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)