Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0901.Seq
         (730 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0337 - 24503417-24503523,24503612-24503715,24503828-245039...    37   0.019
10_07_0189 + 13928680-13928848,13929005-13929267,13929365-13929985     32   0.54 
07_01_0457 - 3468419-3468585,3469674-3469842,3470339-3470384,347...    29   5.0  
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    28   8.7  

>04_04_0337 -
           24503417-24503523,24503612-24503715,24503828-24503927,
           24504009-24504106,24504403-24504455,24504508-24504588,
           24504668-24504739,24504882-24504953,24505045-24505137,
           24505240-24505307,24505388-24505658
          Length = 372

 Score = 36.7 bits (81), Expect = 0.019
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = +1

Query: 499 SQSILFIGDMIAQDVSLGKAVGFNTLLVLTNTTKEEML---SHTIRPDYY 639
           +  I  +GD +  D+  G+  G  TLLVL+  T  +ML    ++I+PD+Y
Sbjct: 308 TSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSVQMLQSPDNSIQPDFY 357



 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/70 (24%), Positives = 27/70 (38%)
 Frame = +2

Query: 287 YRAITYLKRPEVLFINGATDRMVPMKXXXXXXXXXXXXXXXXXEVKQEPVLLGKPGRXFG 466
           Y  +   + P  LFI    D +  +                    KQEP+++GKP     
Sbjct: 238 YGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAILGSTKQEPLVVGKPSTFMM 297

Query: 467 EFAMKRAGIT 496
           ++  K+ GIT
Sbjct: 298 DYLAKKFGIT 307


>10_07_0189 + 13928680-13928848,13929005-13929267,13929365-13929985
          Length = 350

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 198 YGEYIQYLEDDEEIGAVVFTATLR*TCRKCTE 293
           Y  Y  Y ED+EE G + F +T++  CRK  E
Sbjct: 53  YKLYEMYAEDEEEEGYIYFFSTMQFRCRKIVE 84


>07_01_0457 -
           3468419-3468585,3469674-3469842,3470339-3470384,
           3470671-3470753,3471395-3471474,3472320-3472428,
           3472667-3472735,3472874-3472924,3473059-3473184,
           3473312-3473435,3473617-3473672,3473790-3473854,
           3474438-3474513,3475050-3475108,3475275-3475365,
           3475490-3475990
          Length = 623

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = +1

Query: 454 KGFR*IRYEASRHHRSQSILFIGDMIAQDVSLGKAVGFNTLLVLTNTTKEEMLSHTIRPD 633
           KG   + Y+A + H +Q+ L   D     VS   AVGF+  ++L +  + +   H  RPD
Sbjct: 173 KGSVVVGYDAFKAHLAQAALLSADAALPSVST--AVGFDERMLLHSEIEIKPNPHPERPD 230


>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
 Frame = +1

Query: 502  QSILFIGDMIAQDVSLGKAVGF--NTLLVLTNT 594
            + ILF+G+ + Q    G+A+GF  ++LL LT+T
Sbjct: 1453 EKILFLGNKLNQGTPRGQALGFRLDSLLKLTDT 1485


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,578,198
Number of Sequences: 37544
Number of extensions: 340252
Number of successful extensions: 700
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)