Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0901.Seq
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14710-4|AAK84537.3|  526|Caenorhabditis elegans Hypothetical pr...    31   0.84 
U64847-6|AAB04875.1|  380|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U42436-12|AAF99901.1| 1206|Caenorhabditis elegans Guanylyl cycla...    28   5.9  
AB201388-1|BAE78828.1| 1152|Caenorhabditis elegans recepotor typ...    28   5.9  

>L14710-4|AAK84537.3|  526|Caenorhabditis elegans Hypothetical
           protein K02D10.1a protein.
          Length = 526

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
 Frame = +2

Query: 260 DFKINLPKMYRAITYLKRPEVLFINGATDRMVPMKXXXXXXXXXXXXXXXXXEVK-QEPV 436
           D   + PK+ +A  YL+ P V ++    D   P                    V  ++P 
Sbjct: 159 DAHFSYPKIMKASNYLQDPSVEYLVTNQDYTFPGPVPGVVIPGSGATSAAVTAVTGRDPK 218

Query: 437 LLGKPGRXFGEFAMKRAGITDPSR 508
           + GKP +   +F ++RA + DP R
Sbjct: 219 VFGKPHKPMADFLLRRAHV-DPKR 241


>U64847-6|AAB04875.1|  380|Caenorhabditis elegans Hypothetical
           protein F08F3.8 protein.
          Length = 380

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 24  SIDNGFESLIIPSIAVAEYLK 86
           +IDNGFE +++P +  A Y K
Sbjct: 50  AIDNGFEQILVPKVCAANYDK 70


>U42436-12|AAF99901.1| 1206|Caenorhabditis elegans Guanylyl cyclase
           protein 8 protein.
          Length = 1206

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 90  VTFNKTVYCVTCTETKRVLEAHGFKCKE 173
           +TFN  +Y   C ET+R+L  +G +  E
Sbjct: 10  LTFNVLIYLAACQETERILANNGTEDNE 37


>AB201388-1|BAE78828.1| 1152|Caenorhabditis elegans recepotor type
           guanyly cyclase protein.
          Length = 1152

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 90  VTFNKTVYCVTCTETKRVLEAHGFKCKE 173
           +TFN  +Y   C ET+R+L  +G +  E
Sbjct: 10  LTFNVLIYLAACQETERILANNGTEDNE 37


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,044,737
Number of Sequences: 27780
Number of extensions: 294877
Number of successful extensions: 604
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)