Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0901.Seq
         (730 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   2.2  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   2.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.9  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 107 CLLCNLY*DQKSLRSTRIQMQGR 175
           CLLC    DQK+L  + ++  G+
Sbjct: 64  CLLCQKAFDQKNLYQSHLRSHGK 86


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = -3

Query: 617 CDNISSLVVFVKTNKVLKPTAFPRDTSWAIMSP 519
           CD   SL V   T  +L       D  WAI  P
Sbjct: 119 CDVWRSLDVLFSTASILNLCVISLDRYWAITDP 151


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +1

Query: 391 SFYRSGYGRSETRARAAWEARKGFR*IRYEASRHHRSQ 504
           S   S  GRS   +   + +  GF    Y   +HH SQ
Sbjct: 288 SHLSSALGRSACHSPGVYPSTAGFLPPSYHPHQHHPSQ 325


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,871
Number of Sequences: 438
Number of extensions: 3308
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)