Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0900.Seq
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    27   3.6  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    26   6.2  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     26   6.2  

>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1427

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 220  KKLIGRSLNIFFRTAYATDNLM 285
            K   GR LN F +  YATDNL+
Sbjct: 953  KTAAGRILNRFSKDMYATDNLL 974


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +3

Query: 180 CSFSKFKLSAVKWQEADWEKFEYFF*NSL 266
           C FS   LS   W  A W  F Y+F  SL
Sbjct: 283 CLFSNHILSFNFWNPAGWMTFFYYFAISL 311


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
 Frame = +1

Query: 325 IIILPSKYPIPLWSK---NYN*IFYGQLLT*VFD--I*NKYSNLRFKYNIL*PFIALPHL 489
           I++LP++Y  P W K   + + +  G L+  +    I  K S +   + IL PF+A+   
Sbjct: 499 ILLLPTQYGFPSWGKYLFSISDLIAGWLMIKLLSRRISYKRSLIYSSFWILNPFVAIIST 558

Query: 490 KLN-EALSGLI 519
           + N EA+ G++
Sbjct: 559 RGNCEAILGIL 569


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,439,039
Number of Sequences: 5004
Number of extensions: 44862
Number of successful extensions: 81
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)