Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0897.Seq
         (694 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000DD7C7F Cluster: PREDICTED: hypothetical protein;...    36   0.71 
UniRef50_Q9CKZ1 Cluster: Sensor protein; n=2; Pasteurellaceae|Re...    34   2.9  
UniRef50_Q23C37 Cluster: Putative uncharacterized protein; n=1; ...    34   2.9  
UniRef50_UPI00006CB82C Cluster: hypothetical protein TTHERM_0057...    34   3.8  
UniRef50_Q4H2I9 Cluster: Zinc finger protein; n=1; Ciona intesti...    34   3.8  
UniRef50_UPI0000F1EF1C Cluster: PREDICTED: similar to low densit...    33   5.0  
UniRef50_A7A884 Cluster: Putative uncharacterized protein; n=1; ...    33   5.0  
UniRef50_Q8ISS2 Cluster: Peritrophic matrix insect intestinal mu...    33   5.0  
UniRef50_Q6TXG0 Cluster: LRRGT00039; n=1; Rattus norvegicus|Rep:...    33   8.8  
UniRef50_Q7KT96 Cluster: CG32972-PA, isoform A; n=3; Sophophora|...    33   8.8  
UniRef50_Q6FTE1 Cluster: Candida glabrata strain CBS138 chromoso...    33   8.8  

>UniRef50_UPI0000DD7C7F Cluster: PREDICTED: hypothetical protein;
           n=1; Homo sapiens|Rep: PREDICTED: hypothetical protein -
           Homo sapiens
          Length = 408

 Score = 36.3 bits (80), Expect = 0.71
 Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 2/114 (1%)
 Frame = +2

Query: 170 VTNTFEETDDLKTAANAWYIHSNFDRN--YLTVLAAYTDTDS*LGSKIIQVEITTADIQV 343
           +TNT   T  + T A+     S    N  ++T     T T + + +    + ITT+ I +
Sbjct: 166 ITNT---TSTITTTASTITTTSTNTANMIFITTTIITTTTTTFITTTTSTITITTSTITI 222

Query: 344 TAVTSVMEATEDTAAMVVSHLTTVTKTPIMKQLII*ATDTTRNLVTETFITMAS 505
           T   ++   T  T     S +TT T T     +    T TT   +T    T  S
Sbjct: 223 TTTATITTTTSTTTTTTTSTITTTTSTITTTTITTTTTTTTITTMTSIVTTTTS 276


>UniRef50_Q9CKZ1 Cluster: Sensor protein; n=2; Pasteurellaceae|Rep:
           Sensor protein - Pasteurella multocida
          Length = 660

 Score = 34.3 bits (75), Expect = 2.9
 Identities = 18/67 (26%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
 Frame = +2

Query: 116 ILAALKTEAALHENLLADVTNTFEETDDL-KTAANAWYIHSNFDRNYLTVLAAYTDTDS* 292
           ++A L+ +A+L E +  ++T T    D+L KT +   ++H++F   +  +L   +   S 
Sbjct: 112 LMALLQQQASLLEQISQNITGTLTLNDELNKTISQINWLHNDFHNEFTALLQEMSWQQST 171

Query: 293 LGSKIIQ 313
           L + I+Q
Sbjct: 172 LANNIVQ 178


>UniRef50_Q23C37 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1096

 Score = 34.3 bits (75), Expect = 2.9
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = -1

Query: 499 HCYKCFRNQVSCSIRSLND*LLHNRG--FCNRSKMRDHHCRCILRSLHYRRYCCNLNICR 326
           HC  C  + ++C+ + L+   L N    +CN +K  D + +C        + C N N+C 
Sbjct: 807 HCQSCSSDGMTCT-KCLSGFQLQNGNCSYCNNNKFADSNNQCSQNCTELCQVCSNSNLCS 865

Query: 325 SY 320
            Y
Sbjct: 866 VY 867


>UniRef50_UPI00006CB82C Cluster: hypothetical protein
           TTHERM_00579250; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00579250 - Tetrahymena
           thermophila SB210
          Length = 1879

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
 Frame = -1

Query: 499 HCYKCFRNQ--VSCSIRSLND*LLHNRGFCN-RSKMRDHHCRCILRSLHYRRYC--CNLN 335
           +C  C  NQ   +C+  S N  L    G C   S++ D   +CI  S  Y +YC  CN  
Sbjct: 696 NCSACPDNQGGANCTACSNNYVLNSTNGTCTCPSQIIDSSNQCISCSKQYNQYCSTCNQT 755

Query: 334 ICRSYFHLDNFRTQLRIRVCIRC*NRQ 254
            C+S     N+  Q     CI+C + Q
Sbjct: 756 QCQSC--QSNYYLQGSTLKCIQCGSNQ 780


>UniRef50_Q4H2I9 Cluster: Zinc finger protein; n=1; Ciona
           intestinalis|Rep: Zinc finger protein - Ciona
           intestinalis (Transparent sea squirt)
          Length = 815

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
 Frame = -1

Query: 493 YKCFRNQVSCSIRSLND*LLHNRGFCNRSKMRDHHCRCILRSLH---YRRYCCNLNICRS 323
           YKC + + S + R L+  + H +G       R H C  + +SLH     +Y  +LN  + 
Sbjct: 471 YKCLKEECSLTFRDLDAFIAHVKGHETGMTYRCHQCHKVFKSLHDLGLHQYQVHLNSRKK 530

Query: 322 YFHLDNFRTQL 290
                 +  QL
Sbjct: 531 SIQTKTYPCQL 541


>UniRef50_UPI0000F1EF1C Cluster: PREDICTED: similar to low density
            lipoprotein receptor related protein-deleted in tumor;
            n=1; Danio rerio|Rep: PREDICTED: similar to low density
            lipoprotein receptor related protein-deleted in tumor -
            Danio rerio
          Length = 1625

 Score = 33.5 bits (73), Expect = 5.0
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = -1

Query: 529  LYPVTKLG*CHCYKCFRNQVSCSIRSLND*LLHNRGFCNRSKMRDHHCRC 380
            L P T L  CHC   F+NQ    + +  D    N G C  + +    C+C
Sbjct: 1425 LDPDTSLPFCHCTAGFKNQRCDELANPCDYYCQNEGICTITALNKPRCKC 1474


>UniRef50_A7A884 Cluster: Putative uncharacterized protein; n=1;
           Bifidobacterium adolescentis L2-32|Rep: Putative
           uncharacterized protein - Bifidobacterium adolescentis
           L2-32
          Length = 1315

 Score = 33.5 bits (73), Expect = 5.0
 Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
 Frame = +2

Query: 125 ALKTEAALHENLLADVTNTFEETDDLKTAANAWYIHSNFDRNYLTVLAAYTDTDS*LGSK 304
           A    A + ++L+ D   TF   DD    ANA Y+     ++ + V  A  D D+   S 
Sbjct: 395 ASAVNATVEKDLVPDQLKTFSIEDDY---ANADYLFDADGKSSIRVYEA--DADTAAQSS 449

Query: 305 IIQVEITTADIQVTAVTSV-MEATEDTAAMVVSHLTTVTKTPIMKQLII 448
           +  ++    D  VTA+  + +E T+ TAA   SHL  +T     KQ+ +
Sbjct: 450 VDGIDAKGKD--VTALYDITVEGTKVTAAAKASHLKELTGMTKAKQVTL 496


>UniRef50_Q8ISS2 Cluster: Peritrophic matrix insect intestinal
           mucin; n=1; Plutella xylostella|Rep: Peritrophic matrix
           insect intestinal mucin - Plutella xylostella
           (Diamondback moth)
          Length = 1192

 Score = 33.5 bits (73), Expect = 5.0
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +2

Query: 341 VTAVTSVMEATEDTAAMVVSHLTTVTKTPIMKQLII*ATDTTRNLVTET 487
           VTAV +  E   +T  +V S  TTVT  P  ++ ++  T T   +VT T
Sbjct: 844 VTAVPTTSEPEAETVEVVTSAPTTVTHEPTTEEAVVTVTATPEPIVTVT 892


>UniRef50_Q6TXG0 Cluster: LRRGT00039; n=1; Rattus norvegicus|Rep:
           LRRGT00039 - Rattus norvegicus (Rat)
          Length = 322

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
 Frame = +2

Query: 260 VLAAYTDTDS*LGSKIIQVEITTADIQVTAVTSVMEATEDTAAMVVSHLTT---VTKTPI 430
           +  A T T +   +  I    TTA    TA+T+   AT  T A+  +   T   +T T  
Sbjct: 213 ITTAITTTATATTATAITTTATTATAITTAITTTATATTATTAITTTATATTAAITTTVT 272

Query: 431 MKQLII*ATDTTRNLVTETFITMAS 505
           +   I  AT TT    T +  T A+
Sbjct: 273 VTTAITTATSTTATTTTTSITTTAT 297


>UniRef50_Q7KT96 Cluster: CG32972-PA, isoform A; n=3; Sophophora|Rep:
            CG32972-PA, isoform A - Drosophila melanogaster (Fruit
            fly)
          Length = 1853

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
 Frame = +2

Query: 314  VEITTADIQVTAVTSVMEATED----TAAMVVSHLTTVTKTPIMKQLII*ATDTTRNLVT 481
            VEITT +   TA   +   TED    TAA   +  +T T+ P         T TT +   
Sbjct: 1651 VEITTTNTSPTATEELTTTTEDKTTTTAAPTTAVSSTTTEEPSTSTTTEEITTTTSSTAE 1710

Query: 482  ETFITMASP 508
            E   T ASP
Sbjct: 1711 EATTTTASP 1719


>UniRef50_Q6FTE1 Cluster: Candida glabrata strain CBS138 chromosome G
            complete sequence; n=1; Candida glabrata|Rep: Candida
            glabrata strain CBS138 chromosome G complete sequence -
            Candida glabrata (Yeast) (Torulopsis glabrata)
          Length = 1604

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 62   NCNINMNLKIPIIFLFGCILAALKTEAALHENLLAD 169
            NC I    K+P +FL GC  AA K    L+ N +A+
Sbjct: 1491 NCTIERCDKLPPVFLMGCSSAATKLNGNLNPNCVAE 1526


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 575,199,265
Number of Sequences: 1657284
Number of extensions: 10449453
Number of successful extensions: 24081
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 23185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24033
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54545459628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)